Browse Element(s) Details


Os.54379.1.S1_at

Description gb:AK103761.1
DB_XREF= gi:32988970
TID=Os.54379.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143G11, full insert sequence.
FL= gb:AK103761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0499011/11Cytoskeletal protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04960NANA9+2662446..2668408retrotransposon protein, putative, unclassified
LOC_Os09g04970NANA9+2672952..2676041retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04980OsAffx.29724.4.S1_at1/119+2679970..2680590hypothetical protein
LOC_Os09g04990Os.54379.1.S1_at11/119+2684795..2687286Cytoskeletal protein, putative, expressed
LOC_Os09g05000NANA9+2692800..2693939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05020Os.38393.1.S1_at11/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020Os.23189.1.S1_at10/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020OsAffx.6178.1.S1_at9/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05030Os.54128.1.S1_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05030Os.54128.1.S2_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05040OsAffx.17572.1.S1_at10/119+2710085..2711514hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54379.1.S1_at--169--2711Chr09:2686697..2686721 (25 bp)
AAGCTTTTTGACAGTGCTGAGCACA
LOC_Os09g04990
Os.54379.1.S1_at--431--2751Chr09:2686782..2686806 (25 bp)
AAGAACCATCTAGCGAGGCACTGAA
LOC_Os09g04990
Os.54379.1.S1_at--158--8891Chr09:2686884..2686908 (25 bp)
TGAGGCAGCAAATTCACCTGTTCTG
LOC_Os09g04990
Os.54379.1.S1_at--350--5231Chr09:2686972..2686996 (25 bp)
GAATCTTGATGCGTCCATTGAAAGG
LOC_Os09g04990
Os.54379.1.S1_at--218--2911Chr09:2686993..2687017 (25 bp)
AAGGTTTAAGTTGGCTGGAGCGTCA
LOC_Os09g04990
Os.54379.1.S1_at--715--9651Chr09:2687021..2687045 (25 bp)
TCAGATATCTCTGCAGTCTTGAAGA
LOC_Os09g04990
Os.54379.1.S1_at--877--5371Chr09:2687041..2687065 (25 bp)
GAAGAACCATTTTTCCAACACAGTT
LOC_Os09g04990
Os.54379.1.S1_at--362--7951Chr09:2687178..2687202 (25 bp)
GGATAACATCCATGCCCATATTCTT
LOC_Os09g04990
Os.54379.1.S1_at--359--9171Chr09:2687190..2687214 (25 bp)
TGCCCATATTCTTATCTGTTCTTGA
LOC_Os09g04990
Os.54379.1.S1_at--462--6291Chr09:2687227..2687251 (25 bp)
GATGTTGTTTTATGACCTCCTAATT
LOC_Os09g04990
Os.54379.1.S1_at--176--5131Chr09:2687262..2687286 (25 bp)
GCACAATGAATTTTCCGTTACCTGC
LOC_Os09g04990
Target Sequence 
AAGCTTTTTGACAGTGCTGAGCACAAGATGAGGGCTGCAACAGAAATGTGGGAGAAAGTAGAAGAGCAAAGAATGGCAGA
ATTAAAAGAACCATCTAGCGAGGCACTGAAGAAAAGGAAGAAGCAACATAATGCAGATGGTCAAGGGGAGTTGACTCCAG
AGGAGGCAGCTGAGCAGGCAGCAATAATGAGGCAGCAAATTCACCTGTTCTGGGGTAATATGCTTTTTGAGCGTTCTCAA
GTGGAATTCAAACTTGATATCGCTGATTGGAAGAAGAATCTTGATGCGTCCATTGAAAGGTTTAAGTTGGCTGGAGCGTC
AGAATCAGATATCTCTGCAGTCTTGAAGAACCATTTTTCCAACACAGTTTCTGAGTGTGAAGATAAGAAAATCATGACTT
TAGATACAGGAATCTCCCAAATAAGTAACAATATTGAGGACAAGTGTATCCTTGAAAGCTAGGTTTTCATGGTTTTAAGT
TGGATAACATCCATGCCCATATTCTTATCTGTTCTTGATAATATTTTCCTGATGTTGTTTTATGACCTCCTAATTAGGGA
TTACAGCACAATGAATTTTCCGTTACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis