Browse Element(s) Details


Os.54401.1.S1_x_at

Description gb:AK103909.1
DB_XREF= gi:32989118
TID=Os.54401.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150O13, full insert sequence.
FL= gb:AK103909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2969011/11Alkylated DNA repair protein alkB homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29640Os.14491.2.S1_x_at2/1111+16681654..16682648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29640Os.47463.1.S1_x_at2/1111+16681654..16682648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29650NANA11+16682764..16685354transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29660NANA11+16687983..16691287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29670OsAffx.13948.1.S1_at3/1111+16697924..16698379hypothetical protein
LOC_Os11g29680NANA11+16700361..16703053expressed protein
LOC_Os11g29690Os.54401.1.S1_x_at11/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.54401.1.S1_at11/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.51298.1.S1_x_at10/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.51298.1.S1_at8/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29700OsAffx.31205.1.S1_s_at11/1111+16707927..16710097expressed protein
LOC_Os11g29700Os.26671.1.S1_at9/1111+16707927..16710097expressed protein
LOC_Os11g29710OsAffx.31206.1.S1_at7/1111+16727209..16728804MYND finger family protein, expressed
LOC_Os11g29720Os.22485.1.A1_at7/1111+16731582..16735450Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54401.1.S1_x_at--826--7311Chr11:16706762..16706786 (25 bp)
GTGCATTTTTCTTCTTGGAGGCAAA
LOC_Os11g29690
Os.54401.1.S1_x_at--907--1231Chr11:16706798..16706822 (25 bp)
AGTTCCAACAGCAATGTTTCTGCGA
LOC_Os11g29690
Os.54401.1.S1_x_at--44--4931Chr11:16706863..16706887 (25 bp)
GCTTCCATGGTAATGCATTTTACTG
LOC_Os11g29690
Os.54401.1.S1_x_at--621--7831Chr11:16706907..16706931 (25 bp)
GGTAATGCTAATTCAAACACCATAT
LOC_Os11g29690
Os.54401.1.S1_x_at--180--2171Chr11:16706923..16706947 (25 bp)
ACACCATATTTATCATGTTCCTATT
LOC_Os11g29690
Os.54401.1.S1_x_at--739--3511Chr11:16706936..16706960 (25 bp)
CATGTTCCTATTTTTATCTTTCCCG
LOC_Os11g29690
Os.54401.1.S1_x_at--1006--9551Chr11:16706964..16706988 (25 bp)
TCTTATCGCAGGTGTTCCACGAATC
LOC_Os11g29690
Os.54401.1.S1_x_at--998--7891Chr11:16707024..16707048 (25 bp)
GGTTCCGCAGCTATCTGCTGAAGAT
LOC_Os11g29690
Os.54401.1.S1_x_at--359--10811Chr11:16707150..16707174 (25 bp)
TTGTAAAATGCTGCCTTTCTGCTGC
LOC_Os11g29690
Os.54401.1.S1_x_at--510--6491Chr11:16707200..16707224 (25 bp)
GATAGTCTGATTGATTGCCTCTGGA
LOC_Os11g29690
Os.54401.1.S1_x_at--988--10331Chr11:16707271..16707295 (25 bp)
TTTACAGTTTAATCCCTTATGTCCA
LOC_Os11g29690
Target Sequence 
GTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGA
TGGCTGGGGAGGCACGGGAATGCTTCCATGGTAATGCATTTTACTGAACTAAAGTTGTTTTTAGTGGTAATGCTAATTCA
AACACCATATTTATCATGTTCCTATTTTTATCTTTCCCGTCCTCTTATCGCAGGTGTTCCACGAATCTTCACAGGAAGTG
ATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCAAAATTCA
AGGATAAATATCAACATCAGACAAGTCTACTGATCAGTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCT
GCCTTTCTGCTGCCTCCCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACCGGTT
GTGGAAAGATAGGAAAGTTTTGGATCCATTTTACAGTTTAATCCCTTATGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54401.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis