Browse Element(s) Details


Os.22485.1.A1_at

Description gb:CB618435
DB_XREF= gi:29613422
DB_XREF=OSIIEa02F07.r
CLONE=OSIIEa02F07
TID=Os.22485.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.22485 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172827.1 (A.thaliana) cytochrome P450, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g297207/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29690Os.54401.1.S1_x_at11/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.54401.1.S1_at11/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.51298.1.S1_x_at10/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.51298.1.S1_at8/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29700OsAffx.31205.1.S1_s_at11/1111+16707927..16710097expressed protein
LOC_Os11g29700Os.26671.1.S1_at9/1111+16707927..16710097expressed protein
LOC_Os11g29710OsAffx.31206.1.S1_at7/1111+16727209..16728804MYND finger family protein, expressed
LOC_Os11g29720Os.22485.1.A1_at7/1111+16731582..16735450Cytochrome P450 family protein, expressed
LOC_Os11g29730OsAffx.17542.1.S1_at2/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730Os.6901.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730OsAffx.6081.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29740OsAffx.7250.1.S1_at11/1111+16749342..16749860expressed protein
LOC_Os11g29750Os.52639.1.S1_at4/1111+16757199..16762215E1-E2 ATPase family protein

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22485.1.A1_at--673--10091Chr11:16732347..16732371 (25 bp)
TATGTGGGCAAGCACCTAGTACCCG
LOC_Os11g29720
Os.22485.1.A1_at--586--791NONE
ATGTGGGCCATATCGCATGATGAGA
NONE
Os.22485.1.A1_at--564--8891Chr11:16732264..16732288 (25 bp)
TGACCCATGGGTGTTTCGACCCGAA
LOC_Os11g29720
Os.22485.1.A1_at--572--7951NONE
GGATCAGATTTGAGGTTGGCACCGT
NONE
Os.22485.1.A1_at--785--10851Chr11:16732194..16732218 (25 bp)
TTGGCACCGTTTGGATCAGGTCGTC
LOC_Os11g29720
Os.22485.1.A1_at--329--9171Chr11:16732164..16732188 (25 bp)
TGCCCTGGACGGATGATGGGTCTCT
LOC_Os11g29720
Os.22485.1.A1_at--279--2031NONE
ACTTCCTATCTATGGTTTGGCCGGA
NONE
Os.22485.1.A1_at--183--1171NONE
AGTATAAGTGGTCACCGGCTCAGCC
NONE
Os.22485.1.A1_at--984--1131Chr11:16732064..16732088 (25 bp)
AGTGCCTCCGTCTTTCTATGGAGAT
LOC_Os11g29720
Os.22485.1.A1_at--1041--10232Chr11:8099941..8099965 (24 bp)
TTTGTCATGCAGTTCCTCGTAGCAA
NONE
Os.22485.1.A1_at--1158--7571Chr11:16731828..16731852 (25 bp)
GGGCTGACTAATTTATTCCATGCAA
LOC_Os11g29720
Target Sequence 
TATGTGGGCAAGCACCTAGTACCCGCGGGGACTACGGCAATGGTGAATATGTGGGCCATATCGCATGATGAGACGATATG
GGGTGACCCATGGGTGTTTCGACCCGAAAGGTTTATGGAAGAGGATATCAATGTGTTGGGATCAGATTTGAGGTTGGCAC
CGTTTGGATCAGGTCGTCGGGTGTGCCCTGGACGGATGATGGGTCTCTCCACTTCCTATCTATGGTTTGGCCGGATGTTG
CAAGAGTATAAGTGGTCACCGGCTCAGCCGGTTAAACTTACGGAGTGCCTCCGTCTTTCTATGGAGATGAAGAAACCTTT
GGTTTGTCATGCAGTTCCTCGTAGCAAAACTGGCTAAGCTAGCCAAGCTTGTATCATATAGGTGGTGTTAAAAGAGAACT
TAAATGGTTTGTATGTAAATTAGGCAAATATACTTAGATGGTATCACTATATGAAGCCATGTTTATGACTTGATGAAGTT
GTCAAGTAGACATGGAGAATTGAAGATACGCAGGCGTAGGGCTGACTAATTTATTCCATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22485.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis