Browse Element(s) Details


OsAffx.7250.1.S1_at

Description tigr:9639.m02688
TID=OsAffx.7250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2974011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29710OsAffx.31206.1.S1_at7/1111+16727209..16728804MYND finger family protein, expressed
LOC_Os11g29720Os.22485.1.A1_at7/1111+16731582..16735450Cytochrome P450 family protein, expressed
LOC_Os11g29730OsAffx.17542.1.S1_at2/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730Os.6901.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730OsAffx.6081.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29740OsAffx.7250.1.S1_at11/1111+16749342..16749860expressed protein
LOC_Os11g29750Os.52639.1.S1_at4/1111+16757199..16762215E1-E2 ATPase family protein
LOC_Os11g29760OsAffx.19072.1.S1_at11/1111+16766068..16766564hypothetical protein
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7250.1.S1_at--963--7751Chr11:16749789..16749813 (25 bp)
GGTGATTGATCCCACTAACGACCAA
LOC_Os11g29740
OsAffx.7250.1.S1_at--357--9791Chr11:16749774..16749798 (25 bp)
TAACGACCAAGGTAAGGCGCCTTCA
LOC_Os11g29740
OsAffx.7250.1.S1_at--720--9771Chr11:16749762..16749786 (25 bp)
TAAGGCGCCTTCAACGGAGAAAAAG
LOC_Os11g29740
OsAffx.7250.1.S1_at--813--5371Chr11:16749681..16749705 (25 bp)
GAAGAAGGTCCGCTACACTCAAGAG
LOC_Os11g29740
OsAffx.7250.1.S1_at--635--10571Chr11:16749652..16749676 (25 bp)
TTCTATACTGCATTGGGAACCCGGA
LOC_Os11g29740
OsAffx.7250.1.S1_at--1136--931Chr11:16749628..16749652 (25 bp)
AGGAATTGCCCGAGCGCAGGGACAC
LOC_Os11g29740
OsAffx.7250.1.S1_at--795--1071Chr11:16749611..16749635 (25 bp)
AGGGACACGCCCAAGCTGACCGAGG
LOC_Os11g29740
OsAffx.7250.1.S1_at--65--4171Chr11:16749470..16749494 (25 bp)
CGCCATGAGCGGGAGGTCATCTACA
LOC_Os11g29740
OsAffx.7250.1.S1_at--1150--7111Chr11:16749455..16749479 (25 bp)
GTCATCTACAACATCCGCGATAAGC
LOC_Os11g29740
OsAffx.7250.1.S1_at--1065--1671Chr11:16749433..16749457 (25 bp)
AGCCGGAGGACGTGCTTAAGCAGTA
LOC_Os11g29740
OsAffx.7250.1.S1_at--630--6991Chr11:16749387..16749411 (25 bp)
GTACGAGGTTATCATCGACGATGAT
LOC_Os11g29740
Target Sequence 
GGTGATTGATCCCACTAACGACCAAGGTAAGGCGCCTTCAACGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTCCGCTACACTCAAGAGCAGATTCTATACTGCATTGGGAACCCG
GAGGAATTGCCCGAGCGCAGGGACACGCCCAAGCTGACCGAGGCCCTGGGCGCGGAGCTCCTGGCCAAGCTACCGCCGGA
CCTCGTCGCCCACCTGCGCGCCATGGACGACGCCAAGGAGGAGGGCAAGGCGAGGCGCAAGGCGCTCATCGAGGAGCTGC
GCCATGAGCGGGAGGTCATCTACAACATCCGCGATAAGCCGGAGGACGTGCTTAAGCAGTACTACGCCAAAGGCTACGCG
GAGTACGAGGTTATCATCGACGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis