Browse Element(s) Details


OsAffx.31206.1.S1_at

Description tigr:9639.m02686
TID=OsAffx.31206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g297107/11MYND finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29680NANA11+16700361..16703053expressed protein
LOC_Os11g29690Os.54401.1.S1_x_at11/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.54401.1.S1_at11/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.51298.1.S1_x_at10/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29690Os.51298.1.S1_at8/1111+16705435..16707435Alkylated DNA repair protein alkB homolog, putative, expressed
LOC_Os11g29700OsAffx.31205.1.S1_s_at11/1111+16707927..16710097expressed protein
LOC_Os11g29700Os.26671.1.S1_at9/1111+16707927..16710097expressed protein
LOC_Os11g29710OsAffx.31206.1.S1_at7/1111+16727209..16728804MYND finger family protein, expressed
LOC_Os11g29720Os.22485.1.A1_at7/1111+16731582..16735450Cytochrome P450 family protein, expressed
LOC_Os11g29730OsAffx.17542.1.S1_at2/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730Os.6901.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730OsAffx.6081.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29740OsAffx.7250.1.S1_at11/1111+16749342..16749860expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31206.1.S1_at--694--9451Chr11:16727544..16727568 (25 bp)
TCGGCGGCACTCACGTATGTGGCTG
LOC_Os11g29710
OsAffx.31206.1.S1_at--386--5111Chr11:16727550..16727574 (25 bp)
GCACTCACGTATGTGGCTGCTGCTG
LOC_Os11g29710
OsAffx.31206.1.S1_at--183--3791Chr11:16727604..16727628 (25 bp)
CTCGGTGTCGTGTTCGTCCGTCGAG
LOC_Os11g29710
OsAffx.31206.1.S1_at--945--7231Chr11:16727619..16727643 (25 bp)
GTCCGTCGAGGCGAAGAGATTTCTC
LOC_Os11g29710
OsAffx.31206.1.S1_at--476--1351Chr11:16727633..16727657 (25 bp)
AGAGATTTCTCATGGGTGCGCGCGC
LOC_Os11g29710
OsAffx.31206.1.S1_at--328--3471Chr11:16727663..16727687 (25 bp)
CAGGTGCAGGAGGTTCCGGGAGCTC
LOC_Os11g29710
OsAffx.31206.1.S1_at--769--7171NONE
GTCGGAGCAGGCTCACCGGTTCTTG
NONE
OsAffx.31206.1.S1_at--241--3491Chr11:16727762..16727784 (23 bp)
CAGGCTCACCGGTTCTTGCGGCGGT
LOC_Os11g29710
OsAffx.31206.1.S1_at--717--10671NONE
TTCCTCGGCATGGTTACGACATGCA
NONE
OsAffx.31206.1.S1_at--809--5651Chr06:8091086..8091110 (25 bp)
GACATGCAACATTAAGGAAATCTCC
NONE
OsAffx.31206.1.S1_at--953--3511Chr11:16743154..16743174 (21 bp)
CATCTTCCTCACACTTTTGAACGTT
NONE
Target Sequence 
TCGGCGGCACTCACGTATGTGGCTGCTGCTGCTGCTGCTCTGTTTTTTCTTTTATTCCCCCTCGGTGTCGTGTTCGTCCG
TCGAGGCGAAGAGATTTCTCATGGGTGCGCGCGCGGGCGCAGGTGCAGGAGGTTCCGGGAGCTCGCGACGCACCCGGCGG
TGCTGTCGCGCGCGTCGGCGGCGCACGTCGCGGTGCGGTGGGGCGCGTGGTCGGAGCAGGCTCACCGGTTCTTGCGGCGG
TGCGCGGCCGCCGCAGCACTCCACGCCTGCTACTTCCTCGGCATGGTTACGACATGCAACATTAAGGAAATCTCCATCTT
CCTCACACTTTTGAACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis