Browse Element(s) Details


Os.5443.1.S1_x_at

Description gb:AK062145.1
DB_XREF= gi:32972163
TID=Os.5443.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-G09, full insert sequence.
FL= gb:AK062145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g4000011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed
LOC_Os09g40000Os.5443.1.S1_x_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.5443.1.S1_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49143.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49645.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40010Os.31312.2.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40010Os.31312.5.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40014Os.33878.1.S1_at6/119+22958069..22961703hypothetical protein
LOC_Os09g40018Os.31312.5.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified
LOC_Os09g40018Os.31312.2.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5443.1.S1_x_at--457--31Chr09:22937678..22937702 (25 bp)
ATTGTCCTTAAATGAATGGGCCACT
LOC_Os09g40000
Os.5443.1.S1_x_at--946--791Chr09:22937693..22937717 (25 bp)
ATGGGCCACTACTTTGGTTGCATCA
LOC_Os09g40000
Os.5443.1.S1_x_at--1137--3551Chr09:22937713..22937737 (25 bp)
CATCATCTTCACTTCATCCTGTTTG
LOC_Os09g40000
Os.5443.1.S1_x_at--900--6651Chr09:22937739..22937763 (25 bp)
GTTGAAGTTTTAGGCGATCCACTCT
LOC_Os09g40000
Os.5443.1.S1_x_at--867--4691Chr09:22937768..22937925 (25 bp)
GCGGCTTCTTCTCAGGTTTATATTC
LOC_Os09g40000
Os.5443.1.S1_x_at--615--1371Chr09:22938023..22938047 (25 bp)
AGAGCTGCGCATTCGATCTTCAAAC
LOC_Os09g40000
Os.5443.1.S1_x_at--314--6971Chr09:22938052..22938076 (25 bp)
GTACCATAAGGTGGACTTCCTCCCA
LOC_Os09g40000
Os.5443.1.S1_x_at--485--6331Chr09:22938107..22938131 (25 bp)
GATGCAGAGAGCATGCTTTCCCAAT
LOC_Os09g40000
Os.5443.1.S1_x_at--951--3172Chr09:22938128..22938152 (25 bp)
CAATGCTGCCTGTTGCGAGTTGCAT
LOC_Os09g40000
Os.5443.1.S1_x_at--7--10011Chr09:22938248..22938272 (25 bp)
TAGCGGTACCAACTGTGACTCTTGC
LOC_Os09g40000
Os.5443.1.S1_x_at--936--3171Chr09:22938358..22938382 (25 bp)
CAATACCCTATTTATCGTCGTGCTA
LOC_Os09g40000
Target Sequence 
ATTGTCCTTAAATGAATGGGCCACTACTTTGGTTGCATCATCTTCACTTCATCCTGTTTGGGTTGAAGTTTTAGGCGATC
CACTCTTGAGGCGGCTTCTTCTCAGGTTTATATTCTGCAGAGCTGCGCATTCGATCTTCAAACCTACGTACCATAAGGTG
GACTTCCTCCCAACTTGCACACCNCCTTTGCCAGAGTCGGTTGATGCAGAGAGCATGCTTTCCCAATGCTGCCTGTTGCG
AGTTGCATCTTTCTTTGGCGCCACCAACCAATTCTCATTTTCTGAGGTAACCACATGGCCTGAGGTTGATGTTGAGGAGG
CTGCTGTCGTCAACCCCTCGATCTAGCGGTACCAACTGTGACTCTTGCGCATCACAATATTTAGTTTCTACCTATCAAAA
GATGAAGAGATCCATTGTAATACCTTAATGTGGTGTGTGTACAGCCAAATTTGCAATACCCTATTTATCGTCGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5443.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis