Browse Element(s) Details


Os.54463.1.S1_at

Description gb:AK105233.1
DB_XREF= gi:32990442
TID=Os.54463.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F01, full insert sequence.
FL= gb:AK105233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g48710OsAffx.31233.1.S1_at11/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_s_at9/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_at1/115+27837449..27840474expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54463.1.S1_at--1159--6111Chr05:27813314..27813338 (25 bp)
GAGTGGCTAAACTGCATCCCGGAAA
LOC_Os05g48680
Os.54463.1.S1_at--876--7191Chr05:27813267..27813291 (25 bp)
GTCGTCCAGGTTGAGTGATCCCATC
LOC_Os05g48680
Os.54463.1.S1_at--300--4071Chr05:27813238..27813262 (25 bp)
CGACTGTCACTACTGATAACGGCCA
LOC_Os05g48680
Os.54463.1.S1_at--103--2311Chr05:27813211..27813235 (25 bp)
AAATGGCTGCTTCGCATTTCATCTC
LOC_Os05g48680
Os.54463.1.S1_at--34--5071Chr05:27813082..27813210 (25 bp)
GCAGCAGGCTTCACAGCTCGATGAG
LOC_Os05g48680
Os.54463.1.S1_at--230--2951Chr05:27812973..27812997 (25 bp)
AAGGCGAGCAATGACTCCTACGAGT
LOC_Os05g48680
Os.54463.1.S1_at--119--1731Chr05:27812919..27812943 (25 bp)
ACCAGGTTTGGTGACATGCAAGCAA
LOC_Os05g48680
Os.54463.1.S1_at--717--371Chr05:27812851..27812875 (25 bp)
ATCACCGTCACCTCGTTGTAGAATT
LOC_Os05g48680
Os.54463.1.S1_at--1051--6931Chr05:27812834..27812858 (25 bp)
GTAGAATTCCGGATCTGTTTCAGGT
LOC_Os05g48680
Os.54463.1.S1_at--398--6831Chr05:27812818..27812842 (25 bp)
GTTTCAGGTTTCAGCGCTTCAGTTT
LOC_Os05g48680
Os.54463.1.S1_at--1059--10251Chr05:27812795..27812819 (25 bp)
TTTGTTCTTTCACTACGAGCCAATA
LOC_Os05g48680
Target Sequence 
GAGTGGCTAAACTGCATCCCGGAAATGCTTGGGAGGAAGAAAGGATCGTCGTCCAGGTTGAGTGATCCCATCAACACGAC
TGTCACTACTGATAACGGCCAGGAAATGGCTGCTTCGCATTTCATCTCGCAGCAGGCTTCACAGCTCGATGAGGCTGCGA
GGAAGAGACTGCAAAGAATGAACGAGAGGCTGAAGTTGCTGGAGATGCAGATGGAAACACTGGAGGCTGGCGTCGCGAAG
GCGAGCAATGACTCCTACGAGTAGAGATGTTTAGCAATCTTTGTTATAGACACCAGGTTTGGTGACATGCAAGCAAAATT
AGATGATAGCTTGAGTAGTTTTACCTGAACTTGCAGCAAATCACCGTCACCTCGTTGTAGAATTCCGGATCTGTTTCAGG
TTTCAGCGCTTCAGTTTTGTTCTTTCACTACGAGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis