Browse Element(s) Details


Os.54478.1.A1_at

Description gb:AK105282.1
DB_XREF= gi:32990491
TID=Os.54478.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D03, full insert sequence.
FL= gb:AK105282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3274010/11Nudix hydrolase 13, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32700Os.18396.1.S1_at11/114+19523500..19524106expressed protein
LOC_Os04g32710Os.16157.1.S1_at1/114+19525426..19526637NA
LOC_Os04g32720Os.28943.1.S1_x_at4/114+19536603..19539838retrotransposon protein, putative, unclassified
LOC_Os04g32730NANA4+19540826..19546427retrotransposon protein, putative, unclassified
LOC_Os04g32740Os.54478.1.A1_at10/114+19548474..19552799Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os04g32740OsAffx.26291.1.S1_at10/114+19548474..19552799Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os04g32750OsAffx.32166.1218.S1_x_at6/114+19559537..19567831retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32750Os.54113.1.S1_at1/114+19559537..19567831retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32760NANA4+19573414..19574611retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54478.1.A1_at--994--5211Chr04:19552259..19552283 (25 bp)
GAATTTCCTTACCTTTTTGATGTCA
LOC_Os04g32740
Os.54478.1.A1_at--315--3211Chr04:19552282..19552306 (25 bp)
CAAGGTTTGACTGTCTTGTTGTCAC
LOC_Os04g32740
Os.54478.1.A1_at--907--4371Chr04:19552520..19552544 (25 bp)
CCAACTCTTGATTTGCGCAGTCACA
LOC_Os04g32740
Os.54478.1.A1_at--389--8171Chr04:19552577..19552601 (25 bp)
GGAACGAGTCAATGGCCTCCTGATT
LOC_Os04g32740
Os.54478.1.A1_at--334--8431NONE
GGCCTCCTGATTGCCAAGTTTGTCA
NONE
Os.54478.1.A1_at--1101--8651Chr04:19552621..19552645 (25 bp)
TGGGCCGTCCTAATTGACCTGTACT
LOC_Os04g32740
Os.54478.1.A1_at--564--8751Chr04:19552640..19552664 (25 bp)
TGTACTCCAATCCAGAAAGCACCGA
LOC_Os04g32740
Os.54478.1.A1_at--122--10251Chr04:19552680..19552704 (25 bp)
TTTGGTATCTTCAATCATCCCTCAT
LOC_Os04g32740
Os.54478.1.A1_at--103--3531Chr04:19552695..19552719 (25 bp)
CATCCCTCATTTGACAAGGTCCAGG
LOC_Os04g32740
Os.54478.1.A1_at--1155--1332Chr09:3125761..3125783 (23 bp)
AGAGTAGCCGGCCTGTCTATTTAAA
NONE
Os.54478.1.A1_at--454--871Chr04:19552767..19552789 (23 bp)
AGGCCAATAGAACTCTCACCATTTC
LOC_Os04g32740
Target Sequence 
GAATTTCCTTACCTTTTTGATGTCAAGGTTTGACTGTCTTGTTGTCACTTGTTGGTGTTGATACAAATCTGGAACTGCAT
CTCACTGCACACACTCAAATGAACAGTAGACATATATTTATACTGAAACTGAAGACATGAAAACAAACTGAAAATTTTGA
ATTCTAGATTATACCTTTATATCACCTATGCTTTTAAAAAACTTCTTCTGAAACAATGGTGATCAAATGAGCCTGAGACT
TGTTTATATCTAACTTGTAAACCAACTCTTGATTTGCGCAGTCACAAGGAGGGATAATAATCAAAGAGGAAAAGGAAAGG
AACGAGTCAATGGCCTCCTGATTGCCAAGTTTGTCAGTGGGCTGGGCCGTCCTAATTGACCTGTACTCCAATCCAGAAAG
CACCGAGAACAAAGCCGGCAATTTGGTATCTTCAATCATCCCTCATTTGACAAGGTCCAGGGCTTTTTGTAATAGGATCA
GTAGAGTAGCCGGCCTGTCTATTTAAAGGCCAATAGAACTCTCACCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54478.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis