Browse Element(s) Details


Os.54524.1.S1_at

Description gb:AK105517.1
DB_XREF= gi:32990726
TID=Os.54524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F06, full insert sequence.
FL= gb:AK105517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6924011/11SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69260OsAffx.2441.1.S1_at11/111+40579452..40582265hypothetical protein
LOC_Os01g69270NANA1+40583655..40585321MYND finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54524.1.S1_at--549--1811Chr01:40565966..40566283 (25 bp)
ACGCCAACAGGGACTACAGGACGCT
LOC_Os01g69240
Os.54524.1.S1_at--1130--6311Chr01:40565890..40565914 (25 bp)
GATGAACATCGTGACCTGCAAGAAG
LOC_Os01g69240
Os.54524.1.S1_at--1016--931Chr01:40565791..40565815 (25 bp)
AGGCAACCTGGATGGGCTCATCACT
LOC_Os01g69240
Os.54524.1.S1_at--6--8331Chr01:40565777..40565801 (25 bp)
GGCTCATCACTCTCAGAGACATAAT
LOC_Os01g69240
Os.54524.1.S1_at--818--4391Chr01:40565751..40565775 (25 bp)
GCCAAGCTGGTGTACGAGCCGCCTG
LOC_Os01g69240
Os.54524.1.S1_at--232--5671Chr01:40565715..40565739 (25 bp)
GACTTCTTCAATGGCGTTTTCCCTC
LOC_Os01g69240
Os.54524.1.S1_at--511--10391Chr01:40565699..40565723 (25 bp)
TTTTCCCTCTACCTCAGAACAGCAG
LOC_Os01g69240
Os.54524.1.S1_at--555--411Chr01:40565636..40565660 (25 bp)
ATCAGGTTTCTTTTTTATCACTTCA
LOC_Os01g69240
Os.54524.1.S1_at--315--10171Chr01:40565621..40565645 (25 bp)
TATCACTTCATTCTTTCGATCCGGT
LOC_Os01g69240
Os.54524.1.S1_at--1121--6351Chr01:40565604..40565628 (25 bp)
GATCCGGTCCTTTTGTGTAGTATGT
LOC_Os01g69240
Os.54524.1.S1_at--33--10471Chr01:40565550..40565574 (25 bp)
TTACCCTCTAGAAAGATCACCTTAG
LOC_Os01g69240
Target Sequence 
ACGCCAACAGGGACTACAGGACGCTGACGGCGCAAGAGTTCATCGCGAATGCGAGGCAGAGTTCAGGCGAGAAGCAGATG
AACATCGTGACCTGCAAGAAGGAGGAGAGCATAAAGGAGATCATCTTCAAGCTGGATGCAGAGAAGAGGCAGAGGATCTA
CGTCGTGGACGAGCAAGGCAACCTGGATGGGCTCATCACTCTCAGAGACATAATCGCCAAGCTGGTGTACGAGCCGCCTG
GCTACTTTGGGGACTTCTTCAATGGCGTTTTCCCTCTACCTCAGAACAGCAGGGTCTGAAAACCAAAACATTTTCATTAG
TCCAAATTAAATCAGGTTTCTTTTTTATCACTTCATTCTTTCGATCCGGTCCTTTTGTGTAGTATGTGATGTTTCTTTCT
TTGCAATTTCCTCCTTTTACCCTCTAGAAAGATCACCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis