Browse Element(s) Details


Os.54586.1.S1_at

Description gb:AK106016.1
DB_XREF= gi:32991225
TID=Os.54586.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B07, full insert sequence.
FL= gb:AK106016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4102011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54586.1.S1_at--121--6151Chr04:24123765..24123788 (24 bp)
GAGGTGGTCTACAGCAATGTCTACA
LOC_Os04g41020
Os.54586.1.S1_at--104--1471Chr04:24123814..24123838 (25 bp)
AGAATTTCCACCTATGCCAAAGCCA
LOC_Os04g41020
Os.54586.1.S1_at--32--8831Chr04:24124324..24124348 (25 bp)
TGATTGGGCGGTTACCTTTCCGAAT
LOC_Os04g41020
Os.54586.1.S1_at--420--10291Chr04:24124340..24124364 (25 bp)
TTTCCGAATCAAGACCACTCTGGTA
LOC_Os04g41020
Os.54586.1.S1_at--1048--5951Chr04:24124457..24124481 (25 bp)
GAGAACTAAGTTGCACCTGTGAGAT
LOC_Os04g41020
Os.54586.1.S1_at--509--8931Chr04:24124502..24124526 (25 bp)
TGACCATTGACTAAGCCCATTCTTT
LOC_Os04g41020
Os.54586.1.S1_at--322--1672Chr10:17163657..17163692 (25 bp)
AGCCCATTCTTTATGCATTCTTTTG
NONE
Os.54586.1.S1_at--1149--7831Chr04:24124540..24124564 (25 bp)
GGTACATAACTGTTCCATTCCCCTA
LOC_Os04g41020
Os.54586.1.S1_at--1110--3591Chr04:24124555..24124579 (25 bp)
CATTCCCCTATGGTGGGCGAGTTGT
LOC_Os04g41020
Os.54586.1.S1_at--478--7331Chr04:24124609..24124633 (25 bp)
GTGCATTGTCACATCATGCCACTAA
LOC_Os04g41020
Os.54586.1.S1_at--237--4411Chr04:24124626..24124650 (25 bp)
GCCACTAATCTGTTGTATGCTTACC
LOC_Os04g41020
Target Sequence 
GAGGTGGTCTACAGCAATGTCTACATGCTTGATGATGGAATGAAGTGGAAAGAATTTCCACCTATGCCAAAGCCAGATTC
ACATATAGAGTTTGCTTGGGTGAATGTTAACAATTCTCTCATTATTGCTGGAGGAACCACAGAAAAGCACCCAATAACCA
AAAAAATGGTTTTAGTTGGTGAAGTGTTTCGGTTCAACTTGAACACACTGGAATGGACTGTGATTGGGCGGTTACCTTTC
CGAATCAAGACCACTCTGGTAGGATACTGGGATGGCTGGCTGTATTTCACTTCTGGGCAACGAGACAAAGGACCGAAAGA
CCCTTCTCCTAAGAAGGTTGTCGGATGCATGTGGAGAACTAAGTTGCACCTGTGAGATTTTTAGAAGGAAAACTGATATG
ACCATTGACTAAGCCCATTCTTTATGCATTCTTTTGGGTACATAACTGTTCCATTCCCCTATGGTGGGCGAGTTGTTTAT
TATCATACGAATTGTTGGCTTTGTTGTGCATTGTCACATCATGCCACTAATCTGTTGTATGCTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis