Browse Element(s) Details


OsAffx.4044.1.S1_at

Description tigr:9632.m03909
TID=OsAffx.4044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4108011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4044.1.S1_at--412--9571Chr04:24147088..24147112 (25 bp)
TCTTCCTTCACCTTCTGTGTGCGGG
LOC_Os04g41080
OsAffx.4044.1.S1_at--272--9451Chr04:24147217..24147241 (25 bp)
TCGGCGGTGTCAGGACCCTGGATCA
LOC_Os04g41080
OsAffx.4044.1.S1_at--326--8571Chr04:24147235..24147259 (25 bp)
TGGATCAGGCGCTGCGACCACAGTG
LOC_Os04g41080
OsAffx.4044.1.S1_at--1--4791Chr04:24147245..24147269 (25 bp)
GCTGCGACCACAGTGCAAGCTGTGT
LOC_Os04g41080
OsAffx.4044.1.S1_at--447--7051Chr04:24147268..24147292 (25 bp)
GTAAACAGAAGATGATGGCCGGCGC
LOC_Os04g41080
OsAffx.4044.1.S1_at--863--4111Chr04:24147354..24147378 (25 bp)
CGCAACCGCAAGCACGGCATGAGAT
LOC_Os04g41080
OsAffx.4044.1.S1_at--345--5151Chr04:24147361..24147385 (25 bp)
GCAAGCACGGCATGAGATGCAGAAT
LOC_Os04g41080
OsAffx.4044.1.S1_at--500--5031Chr04:24147379..24147403 (25 bp)
GCAGAATATGCAACCGTGTCGCCCG
LOC_Os04g41080
OsAffx.4044.1.S1_at--446--5831Chr04:24147501..24147525 (25 bp)
GACCGGGCGCTGAACGACGCATGCC
LOC_Os04g41080
OsAffx.4044.1.S1_at--799--4751Chr04:24147509..24147533 (25 bp)
GCTGAACGACGCATGCCCGATCTGC
LOC_Os04g41080
OsAffx.4044.1.S1_at--570--811Chr04:24147543..24147567 (25 bp)
ATGGTGGCCCGCGACGATGTCCGCA
LOC_Os04g41080
Target Sequence 
TCTTCCTTCACCTTCTGTGTGCGGGGTGGCGGATGCTGAGGATGTGGACGGCGGCGGGGTGGCCGTGGCCGTACCTGGCG
GCGGGGCGGCGGATTTGGACGCTCGGCGGTGTCAGGACCCTGGATCAGGCGCTGCGACCACAGTGCAAGCTGTGTAAACA
GAAGATGATGGCCGGCGCCGTGGTCCGCGCGCTCTCCTGCGACCACGTCTTCCACAAGGCCTGCGTCGACGAGCGCCTCC
GCAACCGCAAGCACGGCATGAGATGCAGAATATGCAACCGTGTCGCCCGCTGCATGCTGCCGTGGAAGGCGTCGCCGGCG
AACCTGATAGACCACAACGCTCAGAGGTTTCAGCACATCCGTGCTCGCGGCGGCGTCAGGACACTGGACCGGGCGCTGAA
CGACGCATGCCCGATCTGCCAGCACAGGATGGTGGCCCGCGACGATGTCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis