Browse Element(s) Details


Os.15587.2.A1_a_at

Description gb:CB643293
DB_XREF= gi:29638284
DB_XREF=OSJNEb03O12.r
CLONE=OSJNEb03O12
TID=Os.15587.2
CNT=16
FEA=EST
TIER=Stack
STK=10
UG=Os.15587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021D11, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4110011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15587.2.A1_a_at--785--6111Chr04:24155534..24155558 (25 bp)
GAGTGGTTCCGTGAAGTTCCTCTAC
LOC_Os04g41100
Os.15587.2.A1_a_at--480--5351Chr04:24155719..24155743 (25 bp)
GAAGAGTCCTGATCCTCTAGAAGAG
LOC_Os04g41100
Os.15587.2.A1_a_at--337--3211Chr04:24155762..24155786 (25 bp)
CAAGGGAACATTGGCAACCGTGGTC
LOC_Os04g41100
Os.15587.2.A1_a_at--116--2631Chr04:24155777..24155801 (25 bp)
AACCGTGGTCTTTTTGGCTGAGCTA
LOC_Os04g41100
Os.15587.2.A1_a_at--663--8771Chr04:24155811..24155835 (25 bp)
TGTTTGGGCTCTATTGATCCTGACT
LOC_Os04g41100
Os.15587.2.A1_a_at--166--571Chr04:24155827..24155851 (25 bp)
ATCCTGACTGTCATGCATCATTCTG
LOC_Os04g41100
Os.15587.2.A1_a_at--547--9771Chr04:24155965..24155989 (25 bp)
TAAGTTGATAGGTACCTGGCCCATC
LOC_Os04g41100
Os.15587.2.A1_a_at--784--6971Chr04:24155976..24156000 (25 bp)
GTACCTGGCCCATCATAGAAATTTT
LOC_Os04g41100
Os.15587.2.A1_a_at--598--3051Chr04:24156044..24156068 (25 bp)
AATCTGCCTGCATCGTAAGGTGTGG
LOC_Os04g41100
Os.15587.2.A1_a_at--852--7531Chr04:24156065..24156089 (25 bp)
GTGGCATGTTGGCTTTTATTGGTTA
LOC_Os04g41100
Os.15587.2.A1_a_at--885--5011Chr04:24156093..24156117 (25 bp)
GCAGTTTCACCTTTGGAACTTCTGT
LOC_Os04g41100
Target Sequence 
GAGTGGTTCCGTGAAGTTCCTCTACCTAAATCAAAGGATTTCATGCCAACATTCCCTGCTNTAAATGAATTAGACAGGCG
TACCAAACGGTATTTGAAGAGTCCTGATCCTCTAGAAGAGCAACGATTGAAAGAACTACAAGGGAACATTGGCAACCGTG
GTCTTTTTGGCTGAGCTATTAGCAACTTGTTTGGGCTCTATTGATCCTGACTGTCATGCATCATTCTGAATCNTATGAGG
TCAGATACACTCTGAGGTGAGATGTGCCATGGACATGAAGTATCACGCATCTTGGTGTCTACCAGCAACTGATAGTGTTC
TTTAGCAGGCATGGTGCTGGTTTAAGTTGATAGGTACCTGGCCCATCATAGAAATTTTGTTGCAGGATTAACTCCAACCA
GATTGATCATAAAAGCAGTNTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCAC
CTTTGGAACTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15587.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis