Browse Element(s) Details


OsAffx.4042.1.S1_at

Description tigr:9632.m03907
TID=OsAffx.4042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4106010/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4042.1.S1_at--401--8331Chr04:24140347..24140371 (25 bp)
GGCTCCAAGCCCTTGTCAGCAGAAA
LOC_Os04g41060
OsAffx.4042.1.S1_at--363--1411Chr04:24140375..24140399 (25 bp)
AGACACGTTTGATGGCAGACGGGAA
LOC_Os04g41060
OsAffx.4042.1.S1_at--271--5571Chr04:24140418..24140442 (25 bp)
GAAAGACGGCACTGCAGTTCGTCGT
LOC_Os04g41060
OsAffx.4042.1.S1_at--485--1231Chr04:24140433..24140457 (25 bp)
AGTTCGTCGTGTCCTCTTCTGGTTC
LOC_Os04g41060
OsAffx.4042.1.S1_at--619--8571Chr04:24140452..24140476 (25 bp)
TGGTTCGCCGTCTTGGTCATCCGGT
LOC_Os04g41060
OsAffx.4042.1.S1_at--676--551Chr04:24140470..24140494 (25 bp)
ATCCGGTTCGCGCTCCTGATGGCGA
LOC_Os04g41060
OsAffx.4042.1.S1_at--1001--8871Chr04:24140486..24140509 (24 bp)
TGATGGCGATGCACTACTACCACGA
LOC_Os04g41060
OsAffx.4042.1.S1_at--349--2011NONE
ACTACCACGATGTAACGAGTTCAAG
NONE
OsAffx.4042.1.S1_at--2--4551Chr04:24141273..24141297 (25 bp)
GCCCTTTCACGCGTCCGAGGGAGAA
LOC_Os04g41060
OsAffx.4042.1.S1_at--50--7631Chr04:24141309..24141333 (25 bp)
GGGACACCGGACACGAGGCCGTACT
LOC_Os04g41060
OsAffx.4042.1.S1_at--390--891Chr04:24141324..24141348 (25 bp)
AGGCCGTACTGCGACTCTGGCACGG
LOC_Os04g41060
Target Sequence 
GGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGG
CACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACC
ACGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGA
GGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis