Browse Element(s) Details


Os.50305.1.A1_at

Description gb:AK120634.1
DB_XREF= gi:37990257
TID=Os.50305.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153J02, full insert sequence.
FL= gb:AK120634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4110010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50305.1.A1_at--513--6931Chr04:24158410..24158434 (25 bp)
GTAGTGCATTGTTCGCTATGTGTAC
LOC_Os04g41100
Os.50305.1.A1_at--706--2811Chr04:24158564..24158588 (25 bp)
AAGTTGCCGTGTGTGCAAATGCTCA
LOC_Os04g41100
Os.50305.1.A1_at--971--3291Chr04:24158579..24158603 (25 bp)
CAAATGCTCAAATTCGGCTCCAGGA
LOC_Os04g41100
Os.50305.1.A1_at--85--1371NONE
AGAGCGTTCGTGAATCCGCAGACCG
NONE
Os.50305.1.A1_at--1126--1111Chr04:24158652..24158676 (25 bp)
AGTGAGCTGGTCATGTCCGTAGCCT
LOC_Os04g41100
Os.50305.1.A1_at--479--8591Chr04:24158742..24158766 (25 bp)
TGGTCACTTTGATCGGTCGGTACGA
LOC_Os04g41100
Os.50305.1.A1_at--283--571Chr04:24158776..24158800 (25 bp)
ATCCTTCGGGAAAGCACGACTGCAT
LOC_Os04g41100
Os.50305.1.A1_at--869--5671Chr04:24158793..24158817 (25 bp)
GACTGCATTCAGTAGCGGCCTCGGG
LOC_Os04g41100
Os.50305.1.A1_at--710--10311Chr04:24158852..24158876 (25 bp)
TTTCATCCTCATCCGCGAGGTGAAA
LOC_Os04g41100
Os.50305.1.A1_at--198--4311Chr04:24158880..24158904 (25 bp)
CCTTCCAGGGTTCGGTTGCAAAATG
LOC_Os04g41100
Os.50305.1.A1_at--885--751Chr04:24158902..24158926 (25 bp)
ATGTACATACGCAAACGGCTGGGAT
LOC_Os04g41100
Target Sequence 
GTAGTGCATTGTTCGCTATGTGTACTTTGTGTTTTTCTCTCCCCCTTTTGTACTTTCCTATATCAATGCTTGTAAACATG
GAGGACTATTGCTTTACAGTAGTAGGTACTGAGCTAGTATTACATGTAAGTCTGTCTCATTTACAAGAGAGGAGAAGTTG
CCGTGTGTGCAAATGCTCAAATTCGGCTCCAGGAAACCAAGAGCGTTCGTGAATCCGCAGACCGGGCACCGTTGCTGAGG
TGAGTGAGCTGGTCATGTCCGTAGCCTACGTGTAAACCAAGTGATGGTCCTTGCTGGAAGGTGACGGGCGGTAATAAATA
AACTATACCCCCTGGTCACTTTGATCGGTCGGTACGAGGAATGGTTATCCTTCGGGAAAGCACGACTGCATTCAGTAGCG
GCCTCGGGTGAGCATCGGTGTCCGAGTTCTCTTCCTCGTCGATTTCATCCTCATCCGCGAGGTGAAATTACCTTCCAGGG
TTCGGTTGCAAAATGTACATACGCAAACGGCTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50305.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis