Browse Element(s) Details


Os.33948.1.S1_at

Description gb:AY371047.1
DB_XREF= gi:34558718
TID=Os.33948.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33948 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Rad21-2 protein mRNA, complete cds.
PROD=Rad21-2 protein
FL= gb:AY371047.1 gb:AK073406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4111011/11N terminus of Rad21/Rec8 like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007067biological_processmitosis
GO:0000798cellular_componentnuclear cohesin complex
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33948.1.S1_at--457--2891Chr04:24166309..24166332 (24 bp)
AAGGTTTGCTGCGTTCAACAAGAAC
LOC_Os04g41110
Os.33948.1.S1_at--175--2891Chr04:24166432..24166456 (25 bp)
AAGGTACTTCCATCAACTACTCGTG
LOC_Os04g41110
Os.33948.1.S1_at--421--2011Chr04:24166447..24166471 (25 bp)
ACTACTCGTGGACCAGAAGTGCCAA
LOC_Os04g41110
Os.33948.1.S1_at--281--5511Chr04:24166477..24166501 (25 bp)
GAACAATTCTGTATGCCTTGGTCAA
LOC_Os04g41110
Os.33948.1.S1_at--963--10551Chr04:24166538..24166915 (25 bp)
TTCTTCTATGAAACTCTGATCCTGA
LOC_Os04g41110
Os.33948.1.S1_at--266--7631Chr04:24166958..24166982 (25 bp)
GGGACATCATAGTCTCAGCGACTCC
LOC_Os04g41110
Os.33948.1.S1_at--977--2091Chr04:24167037..24167061 (25 bp)
ACATGTTCATTGGTAGTTTTCGGGA
LOC_Os04g41110
Os.33948.1.S1_at--667--2431Chr04:24167062..24167086 (25 bp)
AAAAGAGATCCCAGCTTCCCAGGAG
LOC_Os04g41110
Os.33948.1.S1_at--291--4351Chr04:24167080..24167104 (25 bp)
CCAGGAGCGTTTCACCTTGTTTTAT
LOC_Os04g41110
Os.33948.1.S1_at--1022--1731Chr04:24167093..24167117 (25 bp)
ACCTTGTTTTATCTTCTGTAGCATG
LOC_Os04g41110
Os.33948.1.S1_at--1004--7031Chr04:24167262..24167286 (25 bp)
GTAAATTGCAGTTTCCTATCAGTGT
LOC_Os04g41110
Target Sequence 
AAGGTTTGCTGCGTTCAACAAGAACAAGGACTGTAGCAAGGTACTTCCATCAACTACTCGTGGACCAGAAGTGCCAACAA
CGGAACAATTCTGTATGCCTTGGTCAAGCACTCGAAGGAACGAAAAGAAAAACTTCAGCAAGATTCTTCTATGAAACTCT
GATCCTGAAGAGTGGTAGTCTCATAGAAGTCAATCAAGAGCAGACTTATGGGGACATCATAGTCTCAGCGACTCCGCGGC
TCGAGGCGGCATTGCGGAGTAGTGAGAAGCAATGACTTAATTTGACGCAACATGTTCATTGGTAGTTTTCGGGAAAAAGA
GATCCCAGCTTCCCAGGAGCGTTTCACCTTGTTTTATCTTCTGTAGCATGTTTATGATGGTCAGTCAGATGTATATACTT
AGTTGGGCGCATGTAGCGCTAGATGGTTAGGAACATGTAGAGATGTTAGTTGTTTCCCCCTTTTTTTTCCCCTTTAGATG
GATAGCTTAGTTATTTATAATAACTTTAACAGTTGTAAATTGCAGTTTCCTATCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis