Browse Element(s) Details


Os.28048.1.S1_at

Description gb:AK060198.1
DB_XREF= gi:32970216
TID=Os.28048.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F09, full insert sequence.
FL= gb:AK060198.1 gb:AK058955.1 gb:AK104248.1 gb:AK073488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4115011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein
LOC_Os04g41160Os.6126.1.S1_at11/114+24197226..24199350Protein kinase domain containing protein, expressed
LOC_Os04g41170OsAffx.10981.2.S1_at10/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41170OsAffx.10981.1.S1_at9/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41180OsAffx.14229.1.S1_at11/114+24204691..24205725hypothetical protein
LOC_Os04g41189NANA4+24208009..24208272hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28048.1.S1_at--653--6411Chr04:24185374..24185398 (25 bp)
GATCTATAGTTCTGTGGCTTTCCTC
LOC_Os04g41150
Os.28048.1.S1_at--282--3751Chr04:24185396..24185420 (25 bp)
CTCAGCTTTGTTCTCCTATGTGAAG
LOC_Os04g41150
Os.28048.1.S1_at--1062--5411Chr04:24185545..24185569 (25 bp)
GAAGCCCGGTGTGTACATATGCAAA
LOC_Os04g41150
Os.28048.1.S1_at--926--2751Chr04:24185656..24185680 (25 bp)
AAGACTGTAGCCTTGTGTGATTTTT
LOC_Os04g41150
Os.28048.1.S1_at--995--10411Chr04:24185680..24185704 (25 bp)
TTATGCTAATTTCCTCGACCCAGTA
LOC_Os04g41150
Os.28048.1.S1_at--70--1991Chr04:24185705..24185729 (25 bp)
ACTCGACCGAGTTACACCTAAATGC
LOC_Os04g41150
Os.28048.1.S1_at--577--5111Chr04:24185728..24185752 (25 bp)
GCACTAAGCTTCATCTGTACTCTTT
LOC_Os04g41150
Os.28048.1.S1_at--278--1191Chr04:24185783..24185807 (25 bp)
AGTAGCACTTGATCTGTCCTGTTAA
LOC_Os04g41150
Os.28048.1.S1_at--457--6411Chr04:24185793..24185817 (25 bp)
GATCTGTCCTGTTAAGACCTGCTGT
LOC_Os04g41150
Os.28048.1.S1_at--728--5831Chr04:24185808..24185832 (25 bp)
GACCTGCTGTGCCAAGAGTTCATTT
LOC_Os04g41150
Os.28048.1.S1_at--1030--3431Chr04:24185848..24185872 (25 bp)
CAGGTGCAACAGCTTTTTATTATTA
LOC_Os04g41150
Target Sequence 
GATCTATAGTTCTGTGGCTTTCCTCAGCTTTGTTCTCCTATGTGAAGGCAGGCTTGTTGCTGGTATAGTTTTTGAGTTGG
TGGATAGATTTTCAAAGATTGGTCCACATGTGGGTATACTGTAGTGTGATGATAACAACTATTTATTTTGAGATTCAGAT
TACATATGATTGAAGCCCGGTGTGTACATATGCAAATTTCAAGCTATCTGATCTTGATCATCTCAAAAAGGCTGTCTAAT
TTTTAATGGAACTTGGTTCAGATTTAAGTCCATTTTGCTGGAAAGACTGTAGCCTTGTGTGATTTTTTATGCTAATTTCC
TCGACCCAGTAACTCGACCGAGTTACACCTAAATGCACTAAGCTTCATCTGTACTCTTTGNTTTCATGTATCGAAGATGC
AAATAATACAGTAGCACTTGATCTGTCCTGTTAAGACCTGCTGTGCCAAGAGTTCATTTCATTGTTAGCAACTACAGGTG
CAACAGCTTTTTATTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis