Browse Element(s) Details


OsAffx.14229.1.S1_at

Description tigr:9632.m03923
TID=OsAffx.14229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein
LOC_Os04g41160Os.6126.1.S1_at11/114+24197226..24199350Protein kinase domain containing protein, expressed
LOC_Os04g41170OsAffx.10981.2.S1_at10/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41170OsAffx.10981.1.S1_at9/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41180OsAffx.14229.1.S1_at11/114+24204691..24205725hypothetical protein
LOC_Os04g41189NANA4+24208009..24208272hypothetical protein
LOC_Os04g41200Os.23780.1.A1_at11/114+24212531..24221252Lipase family protein, expressed
LOC_Os04g41210NANA4+24225354..24225750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14229.1.S1_at--688--6871Chr04:24204732..24204756 (25 bp)
GTATTTTCTCGTGTACCATTCTTGT
LOC_Os04g41180
OsAffx.14229.1.S1_at--185--111Chr04:24204749..24204769 (21 bp)
ATTCTTGTTTAATTACGCCGGCAGC
LOC_Os04g41180
OsAffx.14229.1.S1_at--1053--1591Chr04:24205347..24205371 (25 bp)
AGCTGCCGCTCGATGGATGGAACGT
LOC_Os04g41180
OsAffx.14229.1.S1_at--375--7991Chr04:24205361..24205385 (25 bp)
GGATGGAACGTGTCCCGGATGCCCT
LOC_Os04g41180
OsAffx.14229.1.S1_at--410--2851Chr04:24205433..24205457 (25 bp)
AAGTCGGCTGTGATCGTGTGATACT
LOC_Os04g41180
OsAffx.14229.1.S1_at--1162--631Chr04:24205515..24205539 (25 bp)
ATGCATTGCCGGGATCTGTTTCGAC
LOC_Os04g41180
OsAffx.14229.1.S1_at--493--6831Chr04:24205532..24205556 (25 bp)
GTTTCGACATCACAGAGCTTGCTAG
LOC_Os04g41180
OsAffx.14229.1.S1_at--630--1071Chr04:24205591..24205615 (25 bp)
AGGGAGGCTAACTCAGTGGCTCACT
LOC_Os04g41180
OsAffx.14229.1.S1_at--192--1971Chr04:24205613..24205637 (25 bp)
ACTGTTGTTCGAGCCTTGTGTCTTC
LOC_Os04g41180
OsAffx.14229.1.S1_at--621--10831Chr04:24205628..24205652 (25 bp)
TTGTGTCTTCTGCTGAGCGCTCCAT
LOC_Os04g41180
OsAffx.14229.1.S1_at--559--8791Chr04:24205652..24205676 (25 bp)
TGTTCTGGTTTGATGATATCCCGGA
LOC_Os04g41180
Target Sequence 
GTATTTTCTCGTGTACCATTCTTGTTTAATTACGCCGGCAGCTGCCGCTCGATGGATGGAACGTGTCCCGGATGCCCTGA
CTGCTGAAGCTTTGGCGGCGAAGGAAGCTCTAGAGCTAGCGATGGAAGTCGGCTGTGATCGTGTGATACTTGAAGTCAAC
TGTGCTGAGTTGAAGGTTATTCTGGAGGACAGTGAAGGTTTTAAATCATGCATTGCCGGGATCTGTTTCGACATCACAGA
GCTTGCTAGGAGTTTTGTTGATTTCAAAGTAGAATGGGTGCCTAGGGAGGCTAACTCAGTGGCTCACTGTTGTTCGAGCC
TTGTGTCTTCTGCTGAGCGCTCCATGTTCTGGTTTGATGATATCCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis