Browse Element(s) Details


Os.6126.1.S1_at

Description gb:AK067266.1
DB_XREF= gi:32977284
TID=Os.6126.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098C22, full insert sequence.
FL= gb:AK067266.1 gb:AK073224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4116011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein
LOC_Os04g41160Os.6126.1.S1_at11/114+24197226..24199350Protein kinase domain containing protein, expressed
LOC_Os04g41170OsAffx.10981.2.S1_at10/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41170OsAffx.10981.1.S1_at9/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41180OsAffx.14229.1.S1_at11/114+24204691..24205725hypothetical protein
LOC_Os04g41189NANA4+24208009..24208272hypothetical protein
LOC_Os04g41200Os.23780.1.A1_at11/114+24212531..24221252Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6126.1.S1_at--904--6031Chr04:24197727..24197751 (25 bp)
GAGATCCGTCCAAAGAAGGCGATTT
LOC_Os04g41160
Os.6126.1.S1_at--940--10311Chr04:24197705..24197729 (25 bp)
TTTCTCCGTATTTTTCTGAGCGTAT
LOC_Os04g41160
Os.6126.1.S1_at--407--1211Chr04:24197674..24197698 (25 bp)
AGTTCTTTTTTAGCGTTCTCTCTCT
LOC_Os04g41160
Os.6126.1.S1_at--255--3052Chr06:9542418..9542437 (20 bp)
AATCGACTTTGCTCTTGTGTTTAAT
NONE
Os.6126.1.S1_at--722--3451Chr04:24197503..24197527 (25 bp)
CAGTCTGTATAGTATTTTTCCCCTT
LOC_Os04g41160
Os.6126.1.S1_at--306--10791Chr04:24197460..24197484 (25 bp)
TTGTTGGATACATTTCCCCGTGCAA
LOC_Os04g41160
Os.6126.1.S1_at--907--2991Chr04:24197372..24197396 (25 bp)
AATGTTGTGTCCATCCATGTGTTCC
LOC_Os04g41160
Os.6126.1.S1_at--917--6692Chr08:21222349..21222369 (21 bp)
GTTCCATTTCGCTTTGGGTAGCCAT
NONE
Os.6126.1.S1_at--563--6751Chr04:24197323..24197347 (25 bp)
GTTAATACCTGTTACTTCCTTTCAG
LOC_Os04g41160
Os.6126.1.S1_at--1024--7071Chr04:24197281..24197305 (25 bp)
GTCACGGTTTTGTACATTTTTCTGC
LOC_Os04g41160
Os.6126.1.S1_at--269--9831Chr04:24197238..24197262 (25 bp)
TAAATGCTTTGAAGTGCCCTTGCGC
LOC_Os04g41160
Target Sequence 
GAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTA
AAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATA
ATTAAGACAAAGTACGGCGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATT
TTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAG
TGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCCATCCATGTGTTCCATTTCGCTTTGGGTAGCCAT
TGATGTTAATACCTGTTACTTCCTTTCAGTGGGAGTAATAGAAATGGTCACGGTTTTGTACATTTTTCTGCAACATTCTC
TCAAAGTAGTAAATGCTTTGAAGTGCCCTTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis