Browse Element(s) Details


Os.52678.1.S1_at

Description gb:AK068736.1
DB_XREF= gi:32978755
TID=Os.52678.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159E08, full insert sequence.
FL= gb:AK068736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4113010/11FLOWERING LOCUS T protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein
LOC_Os04g41160Os.6126.1.S1_at11/114+24197226..24199350Protein kinase domain containing protein, expressed
LOC_Os04g41170OsAffx.10981.2.S1_at10/114+24201190..24202815retrotransposon protein, putative, unclassified
LOC_Os04g41170OsAffx.10981.1.S1_at9/114+24201190..24202815retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52678.1.S1_at--1045--8611Chr04:24174248..24174272 (25 bp)
TGGGTCTGAGCTCAAACCGTCACAG
LOC_Os04g41130
Os.52678.1.S1_at--842--6591Chr04:24174206..24174230 (25 bp)
GATTGAAATTGCTGGCCGCGACATA
LOC_Os04g41130
Os.52678.1.S1_at--67--3931Chr04:24174195..24174219 (25 bp)
CTGGCCGCGACATAAGGAACCTTTA
LOC_Os04g41130
Os.52678.1.S1_at--939--8171NONE
GGAACCTTTACACTCTGGTGATGGT
NONE
Os.52678.1.S1_at--825--7391Chr04:24173442..24173466 (25 bp)
GTGATGGTGGATCCTGACTCGCCAA
LOC_Os04g41130
Os.52678.1.S1_at--165--3851Chr04:24172703..24172727 (25 bp)
CTGCAGGGATACATCGTTTTGTCTT
LOC_Os04g41130
Os.52678.1.S1_at--555--3231Chr04:24172613..24172637 (25 bp)
CAAGAGATTTTTCCGCACTGTATAA
LOC_Os04g41130
Os.52678.1.S1_at--665--3331Chr04:24172598..24172622 (25 bp)
CACTGTATAATCTTGGACCTCCTGT
LOC_Os04g41130
Os.52678.1.S1_at--1065--5051Chr04:24172572..24172596 (25 bp)
GCAGCAGTGTTCTTCAATTGCCAGA
LOC_Os04g41130
Os.52678.1.S1_at--160--1011Chr04:24172504..24172528 (25 bp)
AGGATCATTCATAGCCCTCTACAAG
LOC_Os04g41130
Os.52678.1.S1_at--324--531Chr04:24172437..24172461 (25 bp)
ATCGCAACGTGCTGGTCAATGGTGG
LOC_Os04g41130
Target Sequence 
TGGGTCTGAGCTCAAACCGTCACAGGTAGCAAATGAACCAAGGATTGAAATTGCTGGCCGCGACATAAGGAACCTTTACA
CTCTGGTGATGGTGGATCCTGACTCGCCAAGTCCAAGCAACCCAACAAAAAGAGAATACCTTCATTGGTTGGTGACAGAC
ATTCCAGAATCGGCAAATGCTAGTTATGGAAATGAAGTTGTCAGTTATGAAAGCCCAAAACCAACTGCAGGGATACATCG
TTTTGTCTTTATATTATTTCGCCAATATGTACAACAGACTATTTATGCACCAGGATGGAGACCAAATTTCAATACAAGAG
ATTTTTCCGCACTGTATAATCTTGGACCTCCTGTGGCAGCAGTGTTCTTCAATTGCCAGAGGGAGAACGGATGTGGAGGC
AGACGGTACATTAGATAAAAGTCAGGATCATTCATAGCCCTCTACAAGAAGAGGTGATATTCATGTGAGAAGATGAATGG
GGTCAGGCACATCGCAACGTGCTGGTCAATGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis