Browse Element(s) Details


OsAffx.14228.1.S1_at

Description tigr:9632.m03917
TID=OsAffx.14228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4112011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed
LOC_Os04g41120OsAffx.14228.1.S1_at11/114+24170037..24171833pentatricopeptide, putative, expressed
LOC_Os04g41130Os.52678.1.S1_at10/114+24171907..24176660FLOWERING LOCUS T protein, putative, expressed
LOC_Os04g41140Os.52761.1.A1_at4/114+24180067..24183366pentatricopeptide, putative, expressed
LOC_Os04g41150Os.28048.1.S1_at11/114+24183568..24186010expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14228.1.S1_at--494--6211Chr04:24171237..24171261 (25 bp)
GAGGCTCTTGACTGCTTTGACAGGA
LOC_Os04g41120
OsAffx.14228.1.S1_at--650--1011Chr04:24171272..24171296 (25 bp)
AGGTTTGCACCCCAATGAGGTCACT
LOC_Os04g41120
OsAffx.14228.1.S1_at--573--351Chr04:24171300..24171324 (25 bp)
ATAACTGTCCTTGGTGCATGTTGCC
LOC_Os04g41120
OsAffx.14228.1.S1_at--181--731Chr04:24171317..24171341 (25 bp)
ATGTTGCCACTCTGGTTTAGTGCAA
LOC_Os04g41120
OsAffx.14228.1.S1_at--476--1371Chr04:24171432..24171456 (25 bp)
AGAGCTGGGCTCATCCAGGAAGCAT
LOC_Os04g41120
OsAffx.14228.1.S1_at--772--9831Chr04:24171467..24171491 (25 bp)
TAAAGCCATGCCTATGAGACCCGGT
LOC_Os04g41120
OsAffx.14228.1.S1_at--1122--7731Chr04:24171489..24171513 (25 bp)
GGTGTGTTCACATGGGTAACCCTAC
LOC_Os04g41120
OsAffx.14228.1.S1_at--794--7051Chr04:24171504..24171528 (25 bp)
GTAACCCTACTAAGTGCATGCCAAG
LOC_Os04g41120
OsAffx.14228.1.S1_at--575--831Chr04:24171540..24171564 (25 bp)
ATGGATTTCTCGCAGCAGATTCTTA
LOC_Os04g41120
OsAffx.14228.1.S1_at--402--811Chr04:24171595..24171619 (25 bp)
ATGGGATTTATGTCCTTCTCTCCAA
LOC_Os04g41120
OsAffx.14228.1.S1_at--250--5831Chr04:24171731..24171755 (25 bp)
GACCTGTGAATTCTTAGTTGGGCAA
LOC_Os04g41120
Target Sequence 
GAGGCTCTTGACTGCTTTGACAGGATGGTTGCATCAGGTTTGCACCCCAATGAGGTCACTTTTATAACTGTCCTTGGTGC
ATGTTGCCACTCTGGTTTAGTGCAAGAAGGCCGTCAGTTGTTTGAGTTGATGACAAAGTCCTACAAGCTCTCACCTTGGG
AAGATCATTATGGTTGCATGGTTGATCTTCTTGGAAGAGCTGGGCTCATCCAGGAAGCATATGATGTAATTAAAGCCATG
CCTATGAGACCCGGTGTGTTCACATGGGTAACCCTACTAAGTGCATGCCAAGCTCATGGACGAATGGATTTCTCGCAGCA
GATTCTTATGCATATCCATGAGTTGGAGTCCTCTGGGAATGGGATTTATGTCCTTCTCTCCAACATGTATGCAGTGAGTG
ATAGATGGGCAGATGTAGGGAAGGCGAGAGGGTTCATGAATGAGAAAGGCATGCAGAAGGAACCAGGATCCAGTGTGATT
GAGGTGAATGGGAAGACCTGTGAATTCTTAGTTGGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis