Browse Element(s) Details


Os.54604.1.S1_at

Description gb:AK106201.1
DB_XREF= gi:32991410
TID=Os.54604.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F05, full insert sequence.
FL= gb:AK106201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g016509/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01620NANA4+409272..415306retrotransposon protein, putative, unclassified
LOC_Os04g01630NANA4+416053..419343retrotransposon protein, putative, unclassified
LOC_Os04g01640NANA4+423796..424539hypothetical protein
LOC_Os04g01650Os.54604.1.S1_at9/114+433847..435380D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein
LOC_Os04g01660Os.53039.1.S1_at11/114+436550..437648D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54604.1.S1_at--268--2911Chr04:434239..434263 (25 bp)
AAGGATTCTGTCTCCTACAACTACT
LOC_Os04g01650
Os.54604.1.S1_at--259--9351Chr04:434169..434193 (25 bp)
TCGCGTGCGCGCTGAACGATGAGAC
LOC_Os04g01650
Os.54604.1.S1_at--329--6311Chr04:434152..434176 (25 bp)
GATGAGACGCGGCACATCGTCGACA
LOC_Os04g01650
Os.54604.1.S1_at--529--9351Chr04:434133..434157 (25 bp)
TCGACAGTAGTGTGCTAGAAGCCCT
LOC_Os04g01650
Os.54604.1.S1_at--198--5751Chr04:434101..434125 (25 bp)
GACGGCGTCGTTGTGAACATCGCTC
LOC_Os04g01650
Os.54604.1.S1_at--1096--8251Chr04:433976..434000 (25 bp)
GGCAGAGCTCCTGTCCATGGACAAT
LOC_Os04g01650
Os.54604.1.S1_at--695--9091Chr04:433947..433971 (25 bp)
TGCTCACGGCGCATGAAGCTGTCTT
LOC_Os04g01650
Os.54604.1.S1_at--193--9571Chr04:433926..433950 (25 bp)
TCTTCACCACTGAATCCAACTGGGA
LOC_Os04g01650
Os.54604.1.S1_at--613--8451Chr04:433899..433923 (25 bp)
TGGCCGACCTCATGATTGCAAACCT
LOC_Os04g01650
Os.54604.1.S1_at--927--4891Chr04:433847..433871 (25 bp)
GCTTACTCCTGTACTTCCCAAGTAA
NONE
Os.54604.1.S1_at--222--331Chr04:433744..433768 (25 bp)
ATACTACTTGTACTTGTTCCTGCCG
NONE
Target Sequence 
AAGGATTCTGTCTCCTACAACTACTTCCCCGATGTCACCGACCTCGCCGCTGCATCCGACGTGCTCATCGTCGCGTGCGC
GCTGAACGATGAGACGCGGCACATCGTCGACAGTAGTGTGCTAGAAGCCCTTGGAAAAGACGGCGTCGTTGTGAACATCG
CTCGCGGCGGGATTGTTGATGAGGCAGAGCTGATCAGGGCACTGAAGGAAGGGAGAATTGCAGGTGCAGGGCTTGATGTG
TTTGAGAAGGAGCCTGATGTGCCGGCAGAGCTCCTGTCCATGGACAATGTGGTGCTCACGGCGCATGAAGCTGTCTTCAC
CACTGAATCCAACTGGGACCTGGCCGACCTCATGATTGCAAACCTGGAGGCCTTCTTCTCCGGTGGCCCATTGCTTACTC
CTGTACTTCCCAAGTAATTGGATATTCATAAATTGCATGGGTATTACTATTACAAGAGATCCATGAACTGAAGTTTAGTG
CAGGATCTGTAAAAAATACTACTTGTACTTGTTCCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis