Browse Element(s) Details


Os.54625.1.S1_at

Description gb:AK106290.1
DB_XREF= gi:32991499
TID=Os.54625.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B02, full insert sequence.
FL= gb:AK106290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4202011/11Serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41980OsAffx.32148.1.S1_at11/1112+26000435..26001631Lipase family protein
LOC_Os12g41990OsAffx.21485.1.S1_at5/1112+26005139..26006857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g42000OsAffx.32149.3.S1_at11/1112+26010614..26011272hypothetical protein
LOC_Os12g42000Os.29072.1.S1_at2/1112+26010614..26011272hypothetical protein
LOC_Os12g42010OsAffx.7860.1.S1_at11/1112+26012052..26013206Lipase family protein
LOC_Os12g42020Os.54625.1.S1_at11/1112+26021615..26023374Serine/threonine protein kinase, putative, expressed
LOC_Os12g42040Os.38179.2.S1_at4/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42040Os.38179.3.S1_x_at2/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42040Os.38179.3.S1_at1/1112+26039751..26042595Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54625.1.S1_at--1149--10631Chr12:26022791..26022815 (25 bp)
TTCGCCGGCGCTACAAACGAGGCGA
LOC_Os12g42020
Os.54625.1.S1_at--473--6711Chr12:26023144..26023168 (25 bp)
GTTCGACCTCTTCTGAGCATATTGA
LOC_Os12g42020
Os.54625.1.S1_at--577--4951Chr12:26023160..26023184 (25 bp)
GCATATTGACCGTTGCTGTCTGCTA
LOC_Os12g42020
Os.54625.1.S1_at--190--5831Chr12:26023167..26023191 (25 bp)
GACCGTTGCTGTCTGCTACTACCTA
LOC_Os12g42020
Os.54625.1.S1_at--1138--8431Chr12:26023232..26023256 (25 bp)
GGCCACCGTGACATTAATTTCTCGT
LOC_Os12g42020
Os.54625.1.S1_at--429--131Chr12:26023244..26023268 (25 bp)
ATTAATTTCTCGTTGACCCTTAGCT
LOC_Os12g42020
Os.54625.1.S1_at--213--10751Chr12:26023256..26023280 (25 bp)
TTGACCCTTAGCTACCGCGTTGAAT
LOC_Os12g42020
Os.54625.1.S1_at--966--1791Chr12:26023269..26023293 (25 bp)
ACCGCGTTGAATGTACACACTGTTA
LOC_Os12g42020
Os.54625.1.S1_at--75--9911Chr12:26023300..26023324 (25 bp)
TACTACTCCTAGTTAATCACTGCTA
LOC_Os12g42020
Os.54625.1.S1_at--107--391Chr12:26023315..26023339 (25 bp)
ATCACTGCTAATCACCTTGCTGTTA
LOC_Os12g42020
Os.54625.1.S1_at--452--391Chr12:26023325..26023349 (25 bp)
ATCACCTTGCTGTTAGTACTACTAA
LOC_Os12g42020
Target Sequence 
TTCGCCGGCGCTACAAACGAGGCGACGCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTG
CGGTCCCGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCGCCTCGGCTCCCGCC
GCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAACCTCGCCCTCCTCCGTTCGTCGCGCCCGCCCGTC
GTCCCCGGCGCCGGCGCCGGCGCCGCGCCGCTACACCGGTCGCAGTCGTGCAAGGCGGCGCCGACAACGCCGCCGCCGCC
GACGACGACGAAGCCGGCGAACGCCACCGCGCGGTTCGACCTCTTCTGAGCATATTGACCGTTGCTGTCTGCTACTACCT
ACCCGCGTCGTCGCCGACATCGCCGGCGGGAGACACGCTCCGGCCACCGTGACATTAATTTCTCGTTGACCCTTAGCTAC
CGCGTTGAATGTACACACTGTTAATTAATTACTACTCCTAGTTAATCACTGCTAATCACCTTGCTGTTAGTACTACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis