Browse Element(s) Details


Os.54672.1.S1_at

Description gb:AK106440.1
DB_XREF= gi:32991649
TID=Os.54672.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D09, full insert sequence.
FL= gb:AK106440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2029010/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g202701/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20250OsAffx.25161.1.S1_at11/113+11421926..11422204hypothetical protein
LOC_Os03g20260NANA3+11428263..11429438Eukaryotic aspartyl protease family protein
LOC_Os03g20270Os.54672.1.S1_at1/113+11438721..11439880Eukaryotic aspartyl protease family protein
LOC_Os03g20280OsAffx.26607.2.S1_at10/113+11440549..11442303hypothetical protein
LOC_Os03g20280OsAffx.22759.2.S1_at1/113+11440549..11442303hypothetical protein
LOC_Os03g20290Os.54672.1.S1_at10/113+11446469..11447983Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20300Os.16992.1.S1_at10/113+11447889..11454565Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed
LOC_Os03g20310Os.15238.1.S1_at11/113+11454734..11460085Transcription factor HBP-1b, putative, expressed
LOC_Os03g20320OsAffx.12950.1.S1_at11/113+11467013..11467396hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54672.1.S1_at--879--1451Chr03:11447407..11447431 (25 bp)
AGAATCCTGCCAATCCAACTTTTTA
LOC_Os03g20290
Os.54672.1.S1_at--144--2532Chr03:11447423..11447447 (25 bp)
AACTTTTTACTACCTCTCGCTGAAG
LOC_Os03g20290
Os.54672.1.S1_at--71--8031Chr03:11447483..11447507 (25 bp)
GGAGTCCGAGTTCGCTCTAAAGAAC
LOC_Os03g20290
Os.54672.1.S1_at--710--7491Chr03:11447613..11447637 (25 bp)
GTGGTGTCCGGCAACACGACGGATC
LOC_Os03g20290
Os.54672.1.S1_at--329--1851Chr03:11447628..11447652 (25 bp)
ACGACGGATCCCTACTTCTGTTTGT
LOC_Os03g20290
Os.54672.1.S1_at--991--7531NONE
GGGCGAAACCGTACGTGCCGAAGAT
NONE
Os.54672.1.S1_at--562--7371Chr03:11447802..11447826 (25 bp)
GTGACCACCATAGGCAATTTCCAGC
LOC_Os03g20290
Os.54672.1.S1_at--446--2391Chr03:11447895..11447919 (25 bp)
AAACTTTAGTCTCGCATTGCTCTGA
LOC_Os03g20290
Os.54672.1.S1_at--267--4951Chr03:11447908..11447932 (25 bp)
GCATTGCTCTGACCATAATTTGTTA
LOC_Os03g20290
Os.54672.1.S1_at--151--7951Chr03:11447947..11447971 (25 bp)
GGATTTGAGCAACTCTATGCCGTAC
LOC_Os03g20290
Os.54672.1.S1_at--891--3751Chr03:11447959..11447983 (25 bp)
CTCTATGCCGTACAGACATCCATGT
LOC_Os03g20290
Target Sequence 
AGAATCCTGCCAATCCAACTTTTTACTACCTCTCGCTGAAGGGCATCACCGTCGGGTCGACGAGGCTGCCGGTGCCGGAG
TCCGAGTTCGCTCTAAAGAACGGGACCGGCGGAACGATCATCGACTCCGGCACGGCCATGACGTCGCTGCCGACGCGTGT
TTACCGGCTCGTCCGTGACGCGTTCGCCGCGCAGGTGAAGCTTCCCGTGGTGTCCGGCAACACGACGGATCCCTACTTCT
GTTTGTCGGCGCCGCTGCGGGCGAAACCGTACGTGCCGAAGATGGTGCTGCACTTCGAGGGCGCGACGATGGACCTGCCC
CGGGAGAACTACGTGTTCGAGGTCGAGGACGCGGGCAGCAGTATCCTCTGCCTTGCCATTATTGAAGGCGGAGAGGTGAC
CACCATAGGCAATTTCCAGCAGCAGAACATGCACGTACTCTATGATCTGCAGAATAGCAAGCTGTCCTTCGTCCCTGCTC
AGTGCGACAAACTTTAGTCTCGCATTGCTCTGACCATAATTTGTTATAGCTGAATAGTTTGGATTTGAGCAACTCTATGC
CGTACAGACATCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis