Browse Element(s) Details


Os.54686.1.S1_at

Description gb:AK106468.1
DB_XREF= gi:32991677
TID=Os.54686.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H08, full insert sequence.
FL= gb:AK106468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3763010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54686.1.S1_at--797--9291NONE
TCCGCCTTGGCCAGGAACAGGAGAT
NONE
Os.54686.1.S1_at--430--8151Chr04:22168347..22168371 (25 bp)
GGAAATGCATACTTACCGGCGTTGA
LOC_Os04g37630
Os.54686.1.S1_at--166--4611Chr04:22168455..22168479 (25 bp)
GCGACGAGCAGCACGGCAATCACGG
LOC_Os04g37630
Os.54686.1.S1_at--528--1791Chr04:22168575..22168599 (25 bp)
ACCGACATTCTGACCCGAGGACTCA
LOC_Os04g37630
Os.54686.1.S1_at--4--8131Chr04:22168593..22168617 (25 bp)
GGACTCATCGCGCTAGCTTCATTGT
LOC_Os04g37630
Os.54686.1.S1_at--58--9991Chr04:22168606..22168630 (25 bp)
TAGCTTCATTGTGGCAACCCCGAAA
LOC_Os04g37630
Os.54686.1.S1_at--892--2591Chr04:22168629..22168653 (25 bp)
AACGACGAGATAACTCGCCTCGCAT
LOC_Os04g37630
Os.54686.1.S1_at--915--4451Chr04:22168645..22168669 (25 bp)
GCCTCGCATTCTACGTATATATACA
LOC_Os04g37630
Os.54686.1.S1_at--427--671Chr04:22168683..22168707 (25 bp)
ATGAAGATTCGTTTCTCCATGTGGA
LOC_Os04g37630
Os.54686.1.S1_at--1132--3131Chr04:22168707..22168731 (25 bp)
AATTGCAGCAATGTACCGGCGCAGT
LOC_Os04g37630
Os.54686.1.S1_at--437--5451Chr04:22168766..22168790 (25 bp)
GAACGCAAGAATTTGTCCCGACTCC
LOC_Os04g37630
Target Sequence 
TCCGCCTTGGCCAGGAACAGGAGATTAGCCAAATATTTGTGGCTGTCAAAGAGCTCAAGATGAACGGAAATGCATACTTA
CCGGCGTTGATGACGACGCGGGCTCCGGCGGAGACCCAGCTGGTGTCCCCGCCGCCGGAGAGCGTCCACCGGCCGGCGCC
GCCGAAGACGACGGCGACGAGCAGCACGGCAATCACGGTCACCGCGATCACCAGCAGCGTCGGGCGCACGGCCGACGACG
AGCGCCGGCTCTTGGTCTTGCCGTGCGCTGGGCTGCTTGGCAGCCACCGCGCCACCGACATTCTGACCCGAGGACTCATC
GCGCTAGCTTCATTGTGGCAACCCCGAAACGACGAGATAACTCGCCTCGCATTCTACGTATATATACAAGTCAATAAACT
GATGAAGATTCGTTTCTCCATGTGGAATTGCAGCAATGTACCGGCGCAGTGCAAGGGTGAGAGATACGTATATGTACTGA
ACTTGAACGCAAGAATTTGTCCCGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis