Browse Element(s) Details


Os.54809.1.S1_at

Description gb:AK106811.1
DB_XREF= gi:32992020
TID=Os.54809.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C10, full insert sequence.
FL= gb:AK106811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4384011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified
LOC_Os12g43860Os.40360.1.S1_x_at1/1112+27200181..27200807hypothetical protein
LOC_Os12g43870NANA12+27205413..27205739hypothetical protein
LOC_Os12g43880OsAffx.32182.1.S1_at11/1112+27210143..27212401expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54809.1.S1_at--246--2331Chr12:27180681..27180705 (25 bp)
AAAGAGGTGTCTTTGCTGGCTTCGC
LOC_Os12g43840
Os.54809.1.S1_at--946--3371Chr12:27180619..27180643 (25 bp)
CATGCGCAAAACATCACCCGAAGTT
LOC_Os12g43840
Os.54809.1.S1_at--889--3931Chr12:27180592..27180616 (25 bp)
CGGAGGCCTACCATCGGCTAGGAGA
LOC_Os12g43840
Os.54809.1.S1_at--228--1431Chr12:27180442..27180466 (25 bp)
AGAAAGCTTGCGTGGCGTTGACCCA
LOC_Os12g43840
Os.54809.1.S1_at--934--6071Chr12:27180251..27180275 (25 bp)
GAGTAATGCCGAGTGACCCGAAGCC
LOC_Os12g43840
Os.54809.1.S1_at--320--6971Chr12:27180195..27180219 (25 bp)
GTAGCTCAGCTGCAATTTTGTGCAT
LOC_Os12g43840
Os.54809.1.S1_at--414--8231Chr12:27180073..27180097 (25 bp)
GGCAACTTTGACATCCTGTTTGAGA
LOC_Os12g43840
Os.54809.1.S1_at--839--6551Chr12:27180044..27180068 (25 bp)
GATTCTTACAACATTCAGCCCAGAC
LOC_Os12g43840
Os.54809.1.S1_at--1142--1651Chr12:27180028..27180052 (25 bp)
AGCCCAGACTGTCCAGTAAGCTTGT
LOC_Os12g43840
Os.54809.1.S1_at--823--6231Chr12:27179974..27179998 (25 bp)
GATGGCTTTTATTTGCTCCAGATGG
LOC_Os12g43840
Os.54809.1.S1_at--1161--3711Chr12:27179923..27179947 (25 bp)
CTAAATGCTAATTCTTCCTTGTGAT
LOC_Os12g43840
Target Sequence 
AAAGAGGTGTCTTTGCTGGCTTCGCATGGGTGAGGGAAAAAAGGCTGTGAAAGATGCAACCACATGCGCAAAACATCACC
CGAAGTTGTCGGAGGCCTACCATCGGCTAGGAGAAGCTCTAATGCTTGAGAAGGATTATGAGAAAGCTTGCGTGGCGTTG
ACCCATGGTATAGAGTTGGATCCTGAAAGTGATGAGATGGACAAACTGTTCTGGGAGGCGATGGACCTGAAGAACTGAGT
AATGCCGAGTGACCCGAAGCCCTTTTTTGTTGGTTTAGAGACAGTTTAACTAGTAGCTCAGCTGCAATTTTGTGCATATG
CAGTACTAGTACTTGGCATTAGGCTTGAATTCATGGTGGGAGTATGGAGAACGGCGTCTTCTTCGGAAGAATTAGAACTG
AAGCATAGGTTAATGGCAACTTTGACATCCTGTTTGAGATATGGATTCTTACAACATTCAGCCCAGACTGTCCAGTAAGC
TTGTGGTGATTTTAGCATGCGAGACGCAGGAATGATGGCTTTTATTTGCTCCAGATGGAGAAGAAATGTTGTTGGAATGA
TGAACTAAATGCTAATTCTTCCTTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis