Browse Element(s) Details


Os.54816.1.S1_at

Description gb:AK106827.1
DB_XREF= gi:32992036
TID=Os.54816.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F02, full insert sequence.
FL= gb:AK106827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g494906/11hypothetical protein
LOC_Os05g495003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein
LOC_Os05g49500OsAffx.15167.1.S1_at10/115+28301306..28303614hypothetical protein
LOC_Os05g49500Os.54816.1.S1_at3/115+28301306..28303614hypothetical protein
LOC_Os05g49510OsAffx.27383.1.S1_at11/115+28305649..28306860hypothetical protein
LOC_Os05g49520OsAffx.15166.1.S1_at11/115+28308917..28314652CTP synthase family protein
LOC_Os05g49530OsAffx.27384.1.S1_at11/115+28317436..28318558F-box domain containing protein
LOC_Os05g49540OsAffx.19542.3.S1_x_at6/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49540OsAffx.9949.1.S1_at1/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54816.1.S1_at--98--6371Chr05:28295398..28295422 (25 bp)
GATCCTACGAATTGGCTAACTTCCC
LOC_Os05g49490
Os.54816.1.S1_at--122--4851Chr05:28295412..28295436 (25 bp)
GCTAACTTCCCAGGCTTTCAGGAGG
LOC_Os05g49490
Os.54816.1.S1_at--572--2051Chr05:28295443..28295467 (25 bp)
ACTTCTTGGATGACCTGCAGTTCTA
LOC_Os05g49490
Os.54816.1.S1_at--29--9051Chr05:28295458..28295482 (25 bp)
TGCAGTTCTATTCAGTATCCAGGAT
LOC_Os05g49490
Os.54816.1.S1_at--722--6891Chr05:28295472..28295496 (25 bp)
GTATCCAGGATTGTTCAGTACCAGG
LOC_Os05g49490
Os.54816.1.S1_at--172--991Chr05:28295494..28295518 (25 bp)
AGGAGTACCTCTGCTTCGACAATGG
LOC_Os05g49490
Os.54816.1.S1_at--677--7572Chr05:28295702..28295726 (25 bp)
GGGCTAACCTGTGCTGCATTTACAT
NONE
Os.54816.1.S1_at--1054--92Chr05:28295725..28295749 (25 bp)
ATTCTGTTAGTGTTACCTCTTGCTG
NONE
Os.54816.1.S1_at--947--9971Chr05:28295738..28295762 (25 bp)
TACCTCTTGCTGCTTTGAGATTTGA
NONE
Os.54816.1.S1_at--547--5592Chr05:28295854..28295878 (25 bp)
GAAATCACTTGCAAACTCATTACTG
NONE
Os.54816.1.S1_at--519--4851Chr05:28295888..28295912 (25 bp)
GCTACTTTGATCTCTGCACTTATAG
NONE
Target Sequence 
GATCCTACGAATTGGCTAACTTCCCAGGCTTTCAGGAGGGCATCTACTTCTTGGATGACCTGCAGTTCTATTCAGTATCC
AGGATTGTTCAGTACCAGGAGTACCTCTGCTTCGACAATGGCAAGTACACGTTGGGGCCGCCTCACGTTGCCAGCCGCTG
CTTCTGGCCGGATCAAGTCAACTCGAACTACTCTTCACCGGTTTGGCTTCTCCCTGGAGGTGAAGATGATGCCAATAATG
CTCAAGCTCAAGTTGATGTTCACATGATGTAGAGCTGCTGGAGTGTATGTTAGTTGCCGAATTGGGGCTAACCTGTGCTG
CATTTACATTCTGTTAGTGTTACCTCTTGCTGCTTTGAGATTTGAGGATGAGATAGTTCTTTCTGCTTTGTGAATTGGGG
ATAGGATTGTTGCTGATTAGTCTGGTACAGTTACAATGACACGGTGGATATTAGCTGAAATCACTTGCAAACTCATTACT
GAATCAATGTGCTACTTTGATCTCTGCACTTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis