Browse Element(s) Details


Os.54823.1.S1_at

Description gb:AK106840.1
DB_XREF= gi:32992049
TID=Os.54823.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H05, full insert sequence.
FL= gb:AK106840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g403609/11F-box domain containing protein, expressed
LOC_Os12g403501/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein
LOC_Os12g40380OsAffx.7843.1.S1_at11/1112+24968681..24969813hypothetical protein
LOC_Os12g40390OsAffx.32120.1.S1_at10/1112+24970908..24973526hypothetical protein
LOC_Os12g40400OsAffx.20053.1.S1_at11/1112+24974169..24974745hypothetical protein
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54823.1.S1_at--49--1471NONE
AGAAGGGCTCCTCCAGTGGAATGAT
NONE
Os.54823.1.S1_at--802--5271NONE
GAATGATGCACACTATGACGGGAAC
NONE
Os.54823.1.S1_at--1026--6011Chr12:24961080..24961104 (25 bp)
GAGAGTTTCAACTATCACCTGAGGT
LOC_Os12g40360
Os.54823.1.S1_at--846--5552Chr12:24961006..24961030 (25 bp)
GAAAGCCATGCTCGACAAAGCTAGT
LOC_Os12g40360
Os.54823.1.S1_at--130--9371Chr12:24960917..24960941 (25 bp)
TCGACTTGTCTCTCCAGAATTTCAA
LOC_Os12g40360
Os.54823.1.S1_at--1031--1471Chr12:24960902..24960926 (25 bp)
AGAATTTCAAGCTGCACACTCTAAA
LOC_Os12g40360
Os.54823.1.S1_at--98--4112Chr12:24960806..24960830 (25 bp)
CGCAAGGCTAGGTCAGGTGTTGTTC
LOC_Os12g40360
Os.54823.1.S1_at--1036--8812Chr12:24934014..24934037 (24 bp)
TGTTGTTCTGTCTGTGCTCTGCTTC
NONE
Os.54823.1.S1_at--1124--5211Chr12:24960743..24960767 (25 bp)
GAATTTTAGGGTGGCTCTTCTCAAT
LOC_Os12g40360
Os.54823.1.S1_at--47--4832Chr03:15857397..15857866 (25 bp)
GCTCTTCTCAATTTCTTCAGGTGTT
NONE
Os.54823.1.S1_at--929--592Chr08:6239812..6239831 (20 bp)
ATGCCCTCTCTCAGTCTGAACAATA
NONE
Target Sequence 
AGAAGGGCTCCTCCAGTGGAATGATGCACACTATGACGGGAACAATTTCTTCGATGGCCTTGAGAGTTTCAACTATCACC
TGAGGTGGATATATCTTGAAGATTTCAGAGGAGGCAAGTGTGAAGTTGCTCTGATGAAAGCCATGCTCGACAAAGCTAGT
GTCCTGAGACAGTTAATGATACAATACTCGACAAGCAGCGTCCCCCAGCTCACCCTGAATCAGCTCGACTTGTCTCTCCA
GAATTTCAAGCTGCACACTCTAAATGGTGCCATCAGAGGCAATCTTGTGTCCTTTGTTGCAGCCGATGCTTCCGGAAGTT
GCGTACGACTAGCAGCGCAAGGCTAGGTCAGGTGTTGTTCTGTCTGTGCTCTGCTTCGGGGAGAGAGAGAGAGAGAGAGA
ATTTTAGGGTGGCTCTTCTCAATTTCTTCAGGTGTTGCTAGTCAAATGATGCTATAACTGATATTCTGCTAAGTGAGTGA
ATGATGCTCTGAGCATCAATGCAGTGAATGATGATGCCCTCTCTCAGTCTGAACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis