Browse Element(s) Details


Os.7648.1.S1_at

Description gb:AK065252.1
DB_XREF= gi:32975270
TID=Os.7648.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002J09, full insert sequence.
FL= gb:AK065252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4034011/11EXS family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40290OsAffx.7842.1.S1_at11/1112+24920974..24922080hypothetical protein
LOC_Os12g40300Os.9360.1.S1_at11/1112+24924402..24927669Skp1 family, dimerisation domain containing protein, expressed
LOC_Os12g40310OsAffx.32119.1.S1_at11/1112+24928403..24930608F-box domain containing protein
LOC_Os12g40320OsAffx.20052.1.S1_x_at11/1112+24932038..24934006F-box domain containing protein
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein
LOC_Os12g40380OsAffx.7843.1.S1_at11/1112+24968681..24969813hypothetical protein
LOC_Os12g40390OsAffx.32120.1.S1_at10/1112+24970908..24973526hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7648.1.S1_at--922--831Chr12:24942891..24942915 (25 bp)
ATGGACTAACCTTCTTTATGGGCAG
LOC_Os12g40340
Os.7648.1.S1_at--1076--1471Chr12:24942757..24942781 (25 bp)
AGCAATCTTGTGCTCCGCTGTACAT
LOC_Os12g40340
Os.7648.1.S1_at--8--2131Chr12:24942736..24942760 (25 bp)
ACATGGACGTACAAGCTTTCAGCAC
LOC_Os12g40340
Os.7648.1.S1_at--241--9451Chr12:24942707..24942731 (25 bp)
TCGGCACAACTACCTGACAGTGTTT
LOC_Os12g40340
Os.7648.1.S1_at--798--3451Chr12:24942649..24942673 (25 bp)
CAGTGGGTGTTCTTCCGTGTCGAGA
LOC_Os12g40340
Os.7648.1.S1_at--720--5571Chr12:24942589..24942613 (25 bp)
GAAATGTCATCTGACATGCCCTCTG
LOC_Os12g40340
Os.7648.1.S1_at--1043--9151Chr12:24942573..24942597 (25 bp)
TGCCCTCTGAAGGAGACAGGCTTTT
LOC_Os12g40340
Os.7648.1.S1_at--430--6911Chr12:24942529..24942553 (25 bp)
GTATGAACTACGAACCGCAGGTCTC
LOC_Os12g40340
Os.7648.1.S1_at--235--5451Chr12:24942518..24942542 (25 bp)
GAACCGCAGGTCTCATATTTTGTGA
LOC_Os12g40340
Os.7648.1.S1_at--631--10351Chr12:24942477..24942501 (25 bp)
TTTTAGTGACCCTTATAGCCCGATT
LOC_Os12g40340
Os.7648.1.S1_at--1145--6511Chr12:24942381..24942405 (25 bp)
GATATTCTTGGCACACTACATATGC
LOC_Os12g40340
Target Sequence 
ATGGACTAACCTTCTTTATGGGCAGATCTGGGTATATTACTGGGTGNTAGCCAGCAATCTTGTGCTCCGCTGTACATGGA
CGTACAAGCTTTCAGCACATNTTCGGCACAACTACCTGACAGTGTTTACAATAGCAGCGCTGGAAATATTGAGGCGGTTT
CAGTGGGTGTTCTTCCGTGTCGAGAACGAGTGGAACAAGATGACAGCCAAGCAGAGTCTGGAAATGTCATCTGACATGCC
CTCTGAAGGAGACAGGCTTTTGGATTCAAATAGTCATACAGTATGAACTACGAACCGCAGGTCTCATATTTTGTGATACC
GATTCATCATTCTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGCCAAAAGGTCAG
GGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis