Browse Element(s) Details


OsAffx.7842.1.S1_at

Description tigr:9640.m03939
TID=OsAffx.7842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40290OsAffx.7842.1.S1_at11/1112+24920974..24922080hypothetical protein
LOC_Os12g40300Os.9360.1.S1_at11/1112+24924402..24927669Skp1 family, dimerisation domain containing protein, expressed
LOC_Os12g40310OsAffx.32119.1.S1_at11/1112+24928403..24930608F-box domain containing protein
LOC_Os12g40320OsAffx.20052.1.S1_x_at11/1112+24932038..24934006F-box domain containing protein
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7842.1.S1_at--936--4791Chr12:24921498..24921522 (25 bp)
GCTCTACGCCGTCACCAGCAAAGAA
LOC_Os12g40290
OsAffx.7842.1.S1_at--670--9671Chr12:24921509..24921533 (25 bp)
TCACCAGCAAAGAAGGCCTCCACGT
LOC_Os12g40290
OsAffx.7842.1.S1_at--274--2651Chr12:24921607..24921631 (25 bp)
AAGAAGTCGGTCCACGTCGACGTGG
LOC_Os12g40290
OsAffx.7842.1.S1_at--58--4171Chr12:24921740..24921764 (25 bp)
CGCCGAGCAGGTTCGACGTCTTGGA
LOC_Os12g40290
OsAffx.7842.1.S1_at--793--6691Chr12:24921750..24921774 (25 bp)
GTTCGACGTCTTGGAGGCGGCCGAC
LOC_Os12g40290
OsAffx.7842.1.S1_at--210--2951Chr12:24921790..24921814 (25 bp)
AAGGCGGTGGACAGCTTGCGCGGGC
LOC_Os12g40290
OsAffx.7842.1.S1_at--846--3611Chr12:24921804..24921828 (25 bp)
CTTGCGCGGGCGAGCGCTGTTCCTC
LOC_Os12g40290
OsAffx.7842.1.S1_at--189--3211Chr12:24921831..24921855 (25 bp)
CAAGGCGGACTCGAGGTCCGTCGTT
LOC_Os12g40290
OsAffx.7842.1.S1_at--508--3551Chr12:24921897..24921921 (25 bp)
CATCTACTTCATGCGGAGGAGTTTC
LOC_Os12g40290
OsAffx.7842.1.S1_at--849--8011Chr12:24921911..24921935 (25 bp)
GGAGGAGTTTCTGGTATCCGAGCAA
LOC_Os12g40290
OsAffx.7842.1.S1_at--315--10311Chr12:24921918..24921942 (25 bp)
TTTCTGGTATCCGAGCAAGGAGGAG
LOC_Os12g40290
Target Sequence 
GCTCTACGCCGTCACCAGCAAAGAAGGCCTCCACGTCCTCGATCTCGACAACGGCGGCGGCGGCGAGGGCGGCGCGGTGC
TCCGCCCGTGCATCGCCGACGACCCCGAGAAGAAGTCGGTCCACGTCGACGTGGAGAGGCGCGGCCACCTCGTCGTGCGC
TACGTGGTGGAGTCCGGCGGGCGGCTGCTGATGGTGCGGTGGTGGAAGAGCCTCCCGCCGCCGGTGTGGAGCGCCGACAG
GCCGCCGAGCAGGTTCGACGTCTTGGAGGCGGCCGACGGCCTCGGCCGGTGGAAGGCGGTGGACAGCTTGCGCGGGCGAG
CGCTGTTCCTCGGCAAGGCGGACTCGAGGTCCGTCGTTGCTGGCGGCGGCGGTGGCGGCGCCGGAGCTCGAGAAGATTGC
ATCTACTTCATGCGGAGGAGTTTCTGGTATCCGAGCAAGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis