Browse Element(s) Details


Os.9360.1.S1_at

Description gb:AK101239.1
DB_XREF= gi:32986448
TID=Os.9360.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031N08, full insert sequence.
FL= gb:AK101239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4030011/11Skp1 family, dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40290OsAffx.7842.1.S1_at11/1112+24920974..24922080hypothetical protein
LOC_Os12g40300Os.9360.1.S1_at11/1112+24924402..24927669Skp1 family, dimerisation domain containing protein, expressed
LOC_Os12g40310OsAffx.32119.1.S1_at11/1112+24928403..24930608F-box domain containing protein
LOC_Os12g40320OsAffx.20052.1.S1_x_at11/1112+24932038..24934006F-box domain containing protein
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9360.1.S1_at--410--4271Chr12:24927165..24927189 (25 bp)
CCTGTGTGCACAGATGACCGCGGAC
LOC_Os12g40300
Os.9360.1.S1_at--192--2212Chr12:24927330..24927354 (25 bp)
ACAACGCTACTTTTGTCGCTGAAGC
LOC_Os12g40300
Os.9360.1.S1_at--975--5392Chr12:24927350..24927374 (25 bp)
GAAGCATTTTGATTCCATCTCGCCT
LOC_Os12g40300
Os.9360.1.S1_at--503--91Chr12:24927361..24927385 (25 bp)
ATTCCATCTCGCCTACTGTGGTGTA
LOC_Os12g40300
Os.9360.1.S1_at--284--6871Chr12:24927396..24927420 (25 bp)
GTATTGGCTTCTCTACGTCTAGATA
LOC_Os12g40300
Os.9360.1.S1_at--300--10031Chr12:24927436..24927460 (25 bp)
TAGATGCACACTTCATCAACCTGGC
LOC_Os12g40300
Os.9360.1.S1_at--361--8491Chr12:24927457..24927481 (25 bp)
TGGCTTCCTGGTATGCTGCTGAACT
LOC_Os12g40300
Os.9360.1.S1_at--1079--4431Chr12:24927552..24927576 (25 bp)
GCCTTGCACCTTACTAGTAGCTATT
LOC_Os12g40300
Os.9360.1.S1_at--296--1191Chr12:24927567..24927591 (25 bp)
AGTAGCTATTACTCGCTGCTTAATT
LOC_Os12g40300
Os.9360.1.S1_at--410--3151Chr12:24927588..24927612 (25 bp)
AATTCAGTCATATTTGGTACTCCTG
LOC_Os12g40300
Os.9360.1.S1_at--544--7831Chr12:24927603..24927627 (25 bp)
GGTACTCCTGTGTACGGTACTAATT
LOC_Os12g40300
Target Sequence 
CCTGTGTGCACAGATGACCGCGGACNCGGTGAAGGGGCGTCCCGTGGGGGAGGTCAAGGCGCTGCTCGGCATCACCGACG
TCGGCATGACGCAGGAGGAGGAGCTCAAGCTCCNAGCAAGACAACGATGCCATCCTCTACCTCCGTTAACTACCTGATCA
TCATCAACAACGCTACTTTTGTCGCTGAAGCATTTTGATTCCATCTCGCCTACTGTGGTGTACTTTGAGGTGGTATTGGC
TTCTCTACGTCTAGATAGACAGCTTAGCTAGATAGATGCACACTTCATCAACCTGGCTTCCTGGTATGCTGCTGAACTTG
TAGTAGTAATTCTGAGAGAAGTTTGGAGGAATTCTGAGAGAAGTTTTGTCTGGTGCGGTGGTGCCTGGGCCTTGCACCTT
ACTAGTAGCTATTACTCGCTGCTTAATTCAGTCATATTTGGTACTCCTGTGTACGGTACTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis