Browse Element(s) Details


Os.54867.1.S1_at

Description gb:AK106955.1
DB_XREF= gi:32992164
TID=Os.54867.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E08, full insert sequence.
FL= gb:AK106955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3560011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35530OsAffx.6034.1.S1_at11/118+22259709..22260897hypothetical protein
LOC_Os08g35540NANA8+22261951..22263344retrotransposon protein, putative, unclassified
LOC_Os08g35550NANA8+22265826..22266742hypothetical protein
LOC_Os08g35560Os.54856.1.S1_at10/118+22268417..22271226expressed protein
LOC_Os08g35560Os.49232.1.S1_x_at6/118+22268417..22271226expressed protein
LOC_Os08g35560Os.47346.1.A1_x_at1/118+22268417..22271226expressed protein
LOC_Os08g35570Os.55680.1.S1_at11/118+22275561..22276111expressed protein
LOC_Os08g35580OsAffx.6035.1.S1_at11/118+22280347..22280796expressed protein
LOC_Os08g35590OsAffx.17348.1.S1_at11/118+22281615..22282076hypothetical protein
LOC_Os08g35600Os.54867.1.S1_at11/118+22283036..22285772Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os08g35610NANA8+22290376..22291260transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54867.1.S1_at--562--8411Chr08:22283588..22283612 (25 bp)
GGCCCTAGAGCCCATATTGGACATG
LOC_Os08g35600
Os.54867.1.S1_at--318--5671Chr08:22283569..22283593 (25 bp)
GACATGAATGACTACCTCCAAATTG
LOC_Os08g35600
Os.54867.1.S1_at--760--9811Chr08:22283543..22283567 (25 bp)
TACATTTGTGTTCACCGTCGTTGTG
LOC_Os08g35600
Os.54867.1.S1_at--285--5971Chr08:22283431..22283455 (25 bp)
GAGAAGCACCAGAGTCACCATGATC
LOC_Os08g35600
Os.54867.1.S1_at--683--6091Chr08:22283420..22283444 (25 bp)
GAGTCACCATGATCGATACCGGCAG
LOC_Os08g35600
Os.54867.1.S1_at--41--2391Chr08:22283387..22283411 (25 bp)
AAACTCTGCAATCCATGCTGACATC
LOC_Os08g35600
Os.54867.1.S1_at--174--631Chr08:22283373..22283397 (25 bp)
ATGCTGACATCGTGCTGCAACGCGA
LOC_Os08g35600
Os.54867.1.S1_at--914--9331Chr08:22283323..22283347 (25 bp)
TCGCTCAGGCGGCACAGAAGGACAC
LOC_Os08g35600
Os.54867.1.S1_at--885--5291Chr08:22283307..22283331 (25 bp)
GAAGGACACCGAGCTATCTCAAGGA
LOC_Os08g35600
Os.54867.1.S1_at--242--7711Chr08:22283279..22283303 (25 bp)
GGGTGCCTAGAATTTCATGGTCAGA
LOC_Os08g35600
Os.54867.1.S1_at--1051--6491Chr08:22283112..22283136 (25 bp)
GATAGTGTTCTGTTATTGGCCGTAA
LOC_Os08g35600
Target Sequence 
GGCCCTAGAGCCCATATTGGACATGAATGACTACCTCCAAATTGGTACATTTGTGTTCACCGTCGTTGTGGAAGATAACA
AGAAGGACGATGTGACCAAAACCAAGCAAGTAGATGGTGAGAACAAGGTTGACATGAGGATCGAGGCGACAGTGGAAGAG
AAGCACCAGAGTCACCATGATCGATACCGGCAGAAGAACCCAAACTCTGCAATCCATGCTGACATCGTGCTGCAACGCGA
CGGCTCCATCGGATCGTACACCACCTCGCTCAGGCGGCACAGAAGGACACCGAGCTATCTCAAGGAGAGGGGTGCCTAGA
ATTTCATGGTCAGACCTAAGAGGGGAAGATATAGGAGTAATATTAATTAGGGGAAACAAAAGGATCTGTACATAACTAAG
CTAGATCTTAGAGGTGTTGTGATACAAGACACACAACACCACATTGGTTTTTTGTGTGGGATTTATTCATTTTATTGATA
GTGTTCTGTTATTGGCCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis