Browse Element(s) Details

Os.54886.1.S1_at

Description

gb:AK107008.1
DB_XREF= gi:32992217
TID=Os.54886.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E10, full insert sequence.
FL= gb:AK107008.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49080	11/11	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090	2/11	transposon protein, putative, Mutator sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49030	Os.11089.1.S1_at	11/11	6	+	29712471..29715990	expressed protein
LOC_Os06g49040	Os.5279.1.S1_at	11/11	6	+	29722468..29726091	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050	Os.53611.1.S1_at	11/11	6	+	29726337..29730922	hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060	Os.54378.1.S1_at	11/11	6	+	29732807..29736190	ternary complex factor MIP1, putative, expressed
LOC_Os06g49070	OsAffx.15991.1.S1_at	11/11	6	+	29736486..29737309	expressed protein
LOC_Os06g49080	Os.54886.1.S1_at	11/11	6	+	29737882..29741501	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090	Os.8048.1.S1_at	11/11	6	+	29743318..29749634	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090	Os.54886.1.S1_at	2/11	6	+	29743318..29749634	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100	OsAffx.28180.1.S1_s_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100	Os.54530.1.S1_x_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100	Os.54530.1.S1_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110	OsAffx.15992.1.S1_at	11/11	6	+	29756047..29760821	Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110	Os.7836.1.S1_s_at	10/11	6	+	29756047..29760821	Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120	Os.26393.1.S1_at	11/11	6	+	29761521..29765747	NmrA-like family protein, expressed
LOC_Os06g49120	OsAffx.15993.1.S1_at	11/11	6	+	29761521..29765747	NmrA-like family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54886.1.S1_at--349--977	1	Chr06:29740328..29740352 (25 bp)	TAATGGGATGGTAACTCCTCCTAGT	LOC_Os06g49080
Os.54886.1.S1_at--795--705	1	Chr06:29740338..29740362 (25 bp)	GTAACTCCTCCTAGTGTGATGTTTG	LOC_Os06g49080
Os.54886.1.S1_at--281--629	1	Chr06:29740521..29740545 (25 bp)	GATGATAGCATCTGGTTGAAGGAAA	LOC_Os06g49080
Os.54886.1.S1_at--26--825	1	Chr06:29740956..29740980 (25 bp)	GGCACGTTAGCCATGTGTTTTAAGA	LOC_Os06g49080
Os.54886.1.S1_at--439--1085	2	Chr06:29741057..29741081 (25 bp)	TTGGGTTGCCACCATATGTCGTACT	LOC_Os06g49080
Os.54886.1.S1_at--345--173	2	Chr06:29749269..29749293 (25 bp)	ACCATATGTCGTACTTTTCTTGCCC	LOC_Os06g49090
Os.54886.1.S1_at--718--529	1	Chr06:29741242..29741266 (25 bp)	GAAGGCTGATGAACCAATGCATTGT	LOC_Os06g49080
Os.54886.1.S1_at--1119--685	1	Chr06:29741265..29741289 (25 bp)	GTTTGGTACCACTTATTTATTCCTG	LOC_Os06g49080
Os.54886.1.S1_at--764--1021	1	Chr06:29741282..29741306 (25 bp)	TATTCCTGGAACATGAATGTGGGCA	LOC_Os06g49080
Os.54886.1.S1_at--384--265	1	Chr06:29741319..29741343 (25 bp)	AACCAGCTAACTGCAGTCTTGCCTG	LOC_Os06g49080
Os.54886.1.S1_at--83--715	1	Chr06:29741334..29741358 (25 bp)	GTCTTGCCTGTCGAGTTAGTATGTT	LOC_Os06g49080

Target Sequence

TAATGGGATGGTAACTCCTCCTAGTGTGATGTTTGAGGAATCTGTTGGGAACAACAAAAATGAAAATCAGGATGATAGCA
TCTGGTTGAAGGAAAAATGGGCAATTGGGGAGATACCGCTGGNTGNACCACCTCAGAGGCACGTTAGCCATGTGTTTTAA
GAACTCAAAGGTGTTTTTTTTTGTGTTGTNGAGGCANGAGACCATGANCTACTCAGCTATGATCTNACTTCCTTGTAGTT
GGGTTGCCACCATATGTCGTACTTTTCTTGCCCNAGCTTCATGACGATACAAAGGAATTATACANCAAACAAGAGAATTT
GCAAGAGTGAACAGTGAAGGAAGGCTGATGAACCAATGCATTGTTTGGTACCACTTATTTATTCCTGGAACATGAATGTG
GGCAACTAGAGCTANCAACCAGCTAACTGCAGTCTTGCCTGTCGAGTTAGTATGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis