Browse Element(s) Details


Os.54888.1.S1_at

Description gb:AK107010.1
DB_XREF= gi:32992219
TID=Os.54888.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F02, full insert sequence.
FL= gb:AK107010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4227011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42230OsAffx.19328.1.S1_at11/1111+24933751..24935553F-box domain containing protein
LOC_Os11g42240OsAffx.31437.1.S1_at11/1111+24939519..24941477F-box domain containing protein
LOC_Os11g42250Os.17297.1.S1_at1/1111+24950559..24954980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42260Os.45173.1.S1_x_at1/1111+24955248..24957188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42270Os.54888.1.S1_at11/1111+24959891..24961625F-box domain containing protein, expressed
LOC_Os11g42280OsAffx.19329.1.S1_at11/1111+24963101..24964311F-box domain containing protein
LOC_Os11g42290Os.51179.1.S1_at3/1111+24965396..24966733Transferase family protein, expressed
LOC_Os11g42300OsAffx.7384.1.S1_at11/1111+24972795..24974276F-box domain containing protein, expressed
LOC_Os11g42310OsAffx.31438.1.S1_at11/1111+24975674..24977449F-box domain containing protein
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54888.1.S1_at--383--2631Chr11:24960414..24960438 (25 bp)
AACCTGAATCTCATCAGCACGGTGT
LOC_Os11g42270
Os.54888.1.S1_at--177--5111Chr11:24960398..24960422 (25 bp)
GCACGGTGTCACCTGACTATTTCAA
LOC_Os11g42270
Os.54888.1.S1_at--1090--5371Chr11:24960367..24960391 (25 bp)
GAAGCAAGTTCAGCATTTCTTTCAA
LOC_Os11g42270
Os.54888.1.S1_at--223--9311Chr11:24960336..24960360 (25 bp)
TCCCAGCTTGATTTCGACAGGTCGA
LOC_Os11g42270
Os.54888.1.S1_at--758--3991Chr11:24960279..24960303 (25 bp)
CGTGGTGATCATCGCCATAACGGCG
LOC_Os11g42270
Os.54888.1.S1_at--104--2571Chr11:24960261..24960285 (25 bp)
AACGGCGATGAGGTTTCTGGATTCA
LOC_Os11g42270
Os.54888.1.S1_at--466--6571Chr11:24960242..24960266 (25 bp)
GATTCATCCCTGGATTGACTGCCTG
LOC_Os11g42270
Os.54888.1.S1_at--110--3371Chr11:24960211..24960235 (25 bp)
CACCTGCTTGCAGTACAATCTGAGA
LOC_Os11g42270
Os.54888.1.S1_at--634--471Chr11:24960194..24960218 (25 bp)
ATCTGAGAAGAGTTAGCCTGCAATT
LOC_Os11g42270
Os.54888.1.S1_at--292--6731Chr11:24960102..24960126 (25 bp)
GTTCTCGAAGAATTGCGCGTATTGA
LOC_Os11g42270
Os.54888.1.S1_at--430--3911Chr11:24959917..24959941 (25 bp)
CTGGATTTGTAGTCTCATCTTGAAA
LOC_Os11g42270
Target Sequence 
AACCTGAATCTCATCAGCACGGTGTCACCTGACTATTTCAAGAACTCGAAGCAAGTTCAGCATTTCTTTCAAAGAAAATC
CCAGCTTGATTTCGACAGGTCGATCGATGATTTCATGCGAAACAGCATATCAAAGCGTGGTGATCATCGCCATAACGGCG
ATGAGGTTTCTGGATTCATCCCTGGATTGACTGCCTGCTCCTTCACCTGCTTGCAGTACAATCTGAGAAGAGTTAGCCTG
CAATTCAGGTTGGATGAGAATTCTGAGAATTTTGGAGTTCGTCTGGTAAAATTCTTCGCTGAAAACGCAATGGTTCTCGA
AGAATTGCGCGTATTGACAGTGGAAACTGAAACCTGAGAGAGTAGAACAATCTGAACGTTGAAGGATGGATGATGCCCAA
ATTAATCATCCAAGAGTACTAGGAATTCTGCACAGAGTTTGTCTGGAATTTCTGAAAAGTTCACCTGGTTTTGTAGTAGG
AGTATTAGTACATCTATCTGGATTTGTAGTCTCATCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis