Browse Element(s) Details


OsAffx.19329.1.S1_at

Description tigr:9639.m03894
TID=OsAffx.19329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4228011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42240OsAffx.31437.1.S1_at11/1111+24939519..24941477F-box domain containing protein
LOC_Os11g42250Os.17297.1.S1_at1/1111+24950559..24954980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42260Os.45173.1.S1_x_at1/1111+24955248..24957188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42270Os.54888.1.S1_at11/1111+24959891..24961625F-box domain containing protein, expressed
LOC_Os11g42280OsAffx.19329.1.S1_at11/1111+24963101..24964311F-box domain containing protein
LOC_Os11g42290Os.51179.1.S1_at3/1111+24965396..24966733Transferase family protein, expressed
LOC_Os11g42300OsAffx.7384.1.S1_at11/1111+24972795..24974276F-box domain containing protein, expressed
LOC_Os11g42310OsAffx.31438.1.S1_at11/1111+24975674..24977449F-box domain containing protein
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19329.1.S1_at--809--2171Chr11:24963722..24963746 (25 bp)
ACACGCTACGGCTGCGGCATTGCAT
LOC_Os11g42280
OsAffx.19329.1.S1_at--94--71Chr11:24963633..24963728 (25 bp)
ATTGCATTTCCGTCTACCTCGTGTC
LOC_Os11g42280
OsAffx.19329.1.S1_at--692--1591Chr11:24963598..24963622 (25 bp)
AGCTCCGATGTCTGGACAGTCTGGT
LOC_Os11g42280
OsAffx.19329.1.S1_at--184--5671Chr11:24963415..24963439 (25 bp)
GACATGGCATTGGTGAACCTCCACT
LOC_Os11g42280
OsAffx.19329.1.S1_at--834--8711Chr11:24963376..24963400 (25 bp)
TGTCGACACGACTACCTACACTTCA
LOC_Os11g42280
OsAffx.19329.1.S1_at--814--9671Chr11:24963342..24963366 (25 bp)
TCACCATGGCGATCAAGGTGCTCAA
LOC_Os11g42280
OsAffx.19329.1.S1_at--512--3371Chr11:24963295..24963319 (25 bp)
CACCTCAGCGACATGGCGTTCGTGA
LOC_Os11g42280
OsAffx.19329.1.S1_at--224--4631Chr11:24963280..24963304 (25 bp)
GCGTTCGTGAGAGTGTTCCCCAACA
LOC_Os11g42280
OsAffx.19329.1.S1_at--742--5731Chr11:24963238..24963262 (25 bp)
GACGGAGCTTACGACACCTGGAACA
LOC_Os11g42280
OsAffx.19329.1.S1_at--646--5911Chr11:24963163..24963187 (25 bp)
GAGCTCAAGCTGAATCTCGTCGGCA
LOC_Os11g42280
OsAffx.19329.1.S1_at--489--5091Chr11:24963141..24963165 (25 bp)
GCACCTCCAAGAACTCCAAACGAGT
LOC_Os11g42280
Target Sequence 
ACACGCTACGGCTGCGGCATTGCATTTCCGTCTACCTCGTGTCCGATGGCCACAGCTCCGATGTCTGGACAGTCTGGTCC
ACCCGCCTCCGCTTCCCGGCGGCCACCGTGCTCGTGCTGATCAACTGCGACACCACCGGCGCCATGGAGATCTACGCGCC
GAGGCTGCGATCCTTCACATACAAGGGGGATGCCGTTCAGCCGTTCGACCTGCAGATCTCGCCGGCGCCGCCGCCGGACA
TGGCATTGGTGAACCTCCACTTCACCCACGCCTTCTGTCGACACGACTACCTACACTTCATCCACAACTTCACCATGGCG
ATCAAGGTGCTCAAGCTGAAGGCGCCGGCGTCGCGCCACCTCAGCGACATGGCGTTCGTGAGAGTGTTCCCCAACATCGA
GCACCTCGAGCTCGACGGAGCTTACGACACCTGGAACAAGACGGCGGCGGCGGTCGCGAGCATCCTCCATTGCTGCCCGG
TGCTTCGCGAGCTCAAGCTGAATCTCGTCGGCACCTCCAAGAACTCCAAACGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis