Browse Element(s) Details


Os.54911.1.S1_at

Description gb:AK107084.1
DB_XREF= gi:32992293
TID=Os.54911.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G02, full insert sequence.
FL= gb:AK107084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3174011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31710Os.54537.1.S1_at11/115+18382240..18383634expressed protein
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0008393molecular_functionfatty acid (omega-1)-hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54911.1.S1_at--1122--2871Chr05:18407760..18407784 (25 bp)
AAGGGCGGGCTGTGGGTGCGGCTAA
LOC_Os05g31740
Os.54911.1.S1_at--119--3731Chr05:18407781..18407805 (25 bp)
CTAAGGAAGCGGGAATAGTCAGTGT
LOC_Os05g31740
Os.54911.1.S1_at--304--1171Chr05:18407797..18407821 (25 bp)
AGTCAGTGTGAGTGATTTGATGCCA
LOC_Os05g31740
Os.54911.1.S1_at--522--211Chr05:18407811..18407835 (25 bp)
ATTTGATGCCACTTGTTGTTCTTGT
LOC_Os05g31740
Os.54911.1.S1_at--1086--8791Chr05:18407824..18407848 (25 bp)
TGTTGTTCTTGTTTGACTAAGTGAA
LOC_Os05g31740
Os.54911.1.S1_at--265--5711Chr05:18407838..18407862 (25 bp)
GACTAAGTGAACTCTTGCATCAGGT
LOC_Os05g31740
Os.54911.1.S1_at--604--5471Chr05:18407846..18407870 (25 bp)
GAACTCTTGCATCAGGTGTTGACGG
LOC_Os05g31740
Os.54911.1.S1_at--41--3571Chr05:18407855..18407879 (25 bp)
CATCAGGTGTTGACGGGAAACCGTT
LOC_Os05g31740
Os.54911.1.S1_at--833--9811Chr05:18407881..18407905 (25 bp)
TAAACACTCGTTGGACATTCACCCG
LOC_Os05g31740
Os.54911.1.S1_at--607--6611Chr05:18407890..18407914 (25 bp)
GTTGGACATTCACCCGTTTCTTACA
LOC_Os05g31740
Os.54911.1.S1_at--1125--2212Chr05:18407994..18408018 (25 bp)
ACAAGTTCAAATTCGTCTTCTATGA
LOC_Os05g31740
Target Sequence 
AAGGGCGGGCTGTGGGTGCGGCTAAGGAAGCGGGAATAGTCAGTGTGAGTGATTTGATGCCACTTGTTGTTCTTGTTTGA
CTAAGTGAACTCTTGCATCAGGTGTTGACGGGAAACCGTTTTAAACACTCGTTGGACATTCACCCGTTTCTTACATGTCA
TCTAAATAATTATGGAAAATTTTTAAAAAAATTGACATGATAGGTTAATATGTAATATATTACTTCACAAATATACAAGT
TCAAATTCGTCTTCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis