Browse Element(s) Details


Os.54925.1.S1_at

Description gb:AK107115.1
DB_XREF= gi:32992324
TID=Os.54925.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A10, full insert sequence.
FL= gb:AK107115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0255011/11expressed protein
LOC_Os04g025202/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein
LOC_Os04g02539NANA4+928966..929187NA
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein
LOC_Os04g02560OsAffx.25840.1.S1_at11/114+946556..947133expressed protein
LOC_Os04g02570OsAffx.25841.1.S1_at11/114+954235..954648hypothetical protein
LOC_Os04g02580Os.52079.1.S1_at11/114+955074..956771expressed protein
LOC_Os04g02590OsAffx.13623.1.S1_at11/114+958618..959001hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54925.1.S1_at--1131--2971Chr04:932295..932319 (25 bp)
AATGTGCTCGCTCATTTCATCGTAT
LOC_Os04g02550
Os.54925.1.S1_at--913--10011Chr04:932186..932210 (25 bp)
TAGCTTGGATTCTGTTCATTCCTGC
LOC_Os04g02550
Os.54925.1.S1_at--504--2571Chr04:932118..932142 (25 bp)
AACTGGTGTGTGAGCTCTGCATCTA
LOC_Os04g02550
Os.54925.1.S1_at--1021--7312Chr04:932092..932116 (25 bp)
GTGCTCAGTTATTTTCTCCATACAT
LOC_Os04g02550
Os.54925.1.S1_at--86--3591Chr04:932057..932081 (25 bp)
CATTTGGCCGGTTGGTCGATCTGAT
LOC_Os04g02550
Os.54925.1.S1_at--312--6411Chr04:932040..932064 (25 bp)
GATCTGATTGTTCGACCGATCCATC
LOC_Os04g02550
Os.54925.1.S1_at--748--571Chr04:932022..932046 (25 bp)
ATCCATCCATCAGAGTACGTACTTT
LOC_Os04g02550
Os.54925.1.S1_at--178--5512Chr04:931952..931976 (25 bp)
GAAAACTTTGATCTCTAGCACCGTT
LOC_Os04g02550
Os.54925.1.S1_at--1151--1751Chr04:931933..931957 (25 bp)
ACCGTTTCTGGTGTGGTGTGCTAAT
LOC_Os04g02550
Os.54925.1.S1_at--336--6371Chr04:931866..931890 (25 bp)
GATCCATTGGGTGATACTCATGCAG
LOC_Os04g02550
Os.54925.1.S1_at--993--5691Chr04:931776..931800 (25 bp)
GACTGACCTAAGTTTGTACTCCTAA
LOC_Os04g02550
Target Sequence 
AATGTGCTCGCTCATTTCATCGTATCATTTNGCANNGGCAGCAATATCTAATGCATGATGAGTAAGTACATCTCCGGCCG
GNCATCCAGACGCTCGTCATCTGCTTGTTACTAGCTTGGATTCTGTTCATTCCTGCTTCTTGGTTTTTGTGNGAAATTTT
TTTTAAAAAAATGGATGCTCAACTGGTGTGTGAGCTCTGCATCTATGTGCTCAGTTATTTTCTCCATACATGCTTGCTTT
CCATTTGGCCGGTTGGTCGATCTGATTGTTCGACCGATCCATCCATCAGAGTACGTACTTTGTACGCATCATCTTAATTT
CTAGATAGATGATCACACATNCATATGAAAACTTTGATCTCTAGCACCGTTTCTGGTGTGGTGTGCTAATTAGAGATCGA
CGAATAAATCATCAGCTTCAGAGGCATGAGAAGATCCATTGGGTGATACTCATGCAGTCGAGTTGTTGTTGTGCACTTGT
TTGTGGGTGTGTGTGTGTTCGTGTGATTTGTCAGCATATATGGACTGACCTAAGTTTGTACTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis