Browse Element(s) Details


Os.54927.1.S1_at

Description gb:AK107230.1
DB_XREF= gi:32992439
TID=Os.54927.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E03, full insert sequence.
FL= gb:AK107230.1 gb:AK107117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4459011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44560Os.52207.1.S1_at10/118+27881215..27887115expressed protein
LOC_Os08g44570NANA8+27893495..27899650retrotransposon protein, putative, unclassified
LOC_Os08g44580Os.28943.1.S1_x_at1/118+27900293..27903491retrotransposon protein, putative, unclassified
LOC_Os08g44590Os.54927.1.S1_at11/118+27910366..27912739oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g44600Os.52290.1.S2_at2/118+27913627..27917536hypothetical protein
LOC_Os08g44610NANA8+27923604..27924038hypothetical protein
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54927.1.S1_at--973--9731Chr08:27912173..27912197 (25 bp)
TAATTGCGGAATTGCCTTGGCTAAG
LOC_Os08g44590
Os.54927.1.S1_at--599--2471Chr08:27912207..27912231 (25 bp)
AACACAGCCCACAGATCATCGATAT
LOC_Os08g44590
Os.54927.1.S1_at--512--1571Chr08:27912289..27912313 (25 bp)
AGCTAGCTTGCTGTTAGCAGCTTAA
LOC_Os08g44590
Os.54927.1.S1_at--295--1431Chr08:27912362..27912386 (25 bp)
AGAACAAGTCAACAGCAGGGCCCAA
LOC_Os08g44590
Os.54927.1.S1_at--1132--5031Chr08:27912400..27912424 (25 bp)
GCAGAGGCAGGATTTGACCGGTCAA
LOC_Os08g44590
Os.54927.1.S1_at--1135--7811Chr08:27912419..27912443 (25 bp)
GGTCAAACCTAGCTTTTCAGCTTAA
LOC_Os08g44590
Os.54927.1.S1_at--1061--10511Chr08:27912434..27912458 (25 bp)
TTCAGCTTAATTGCCTTCCCAACAA
LOC_Os08g44590
Os.54927.1.S1_at--621--6611Chr08:27912462..27912486 (25 bp)
GATTGGCGCGCATTGACTAGCTAAT
LOC_Os08g44590
Os.54927.1.S1_at--166--9791Chr08:27912518..27912542 (25 bp)
TAAGTTGTCTTGTTCTCATCGATCG
LOC_Os08g44590
Os.54927.1.S1_at--876--3751Chr08:27912532..27912556 (25 bp)
CTCATCGATCGATTGGTCGTCTGAA
LOC_Os08g44590
Os.54927.1.S1_at--913--1691Chr08:27912565..27912589 (25 bp)
AGCCAGCTGTGGGTTTGCGTATGTA
LOC_Os08g44590
Target Sequence 
TAATTGCGGAATTGCCTTGGCTAAGTTAGCTCCAAACACAGCCCACAGATCATCGATATGATTGATCAAACTCGATCTCA
CTTAATTAATTATATAACTACTATATTCACCTATATAGCTAGCTTGCTGTTAGCAGCTTAATTGCCGGAGTAAAATTAAA
TCAAATCAATCGATCGATTGATCGACAAGAGAACAAGTCAACAGCAGGGCCCAACTCCCTGAACGAGGCAGAGGCAGGAT
TTGACCGGTCAAACCTAGCTTTTCAGCTTAATTGCCTTCCCAACAATTCGATTGGCGCGCATTGACTAGCTAATAATATC
CATACATATGAGAGTATACTATAATTAAGTTGTCTTGTTCTCATCGATCGATTGGTCGTCTGAAAAAGCCAAAGCCAGCT
GTGGGTTTGCGTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis