Browse Element(s) Details


Os.54929.1.S1_at

Description gb:AK107119.1
DB_XREF= gi:32992328
TID=Os.54929.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B03, full insert sequence.
FL= gb:AK107119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4640011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46370Os.27114.1.S1_at10/114+27275382..27278873L-asparaginase, putative, expressed
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein
LOC_Os04g46390Os.10148.1.S1_at11/114+27286392..27290953DnaJ protein homolog, putative, expressed
LOC_Os04g46400Os.54929.1.S1_at11/114+27298110..27299245AP2 domain containing protein, expressed
LOC_Os04g46410OsAffx.14299.2.S1_at11/114+27304305..27305048AP2 domain containing protein, expressed
LOC_Os04g46420OsAffx.26484.1.S1_at10/114+27306715..27306997hypothetical protein
LOC_Os04g46430OsAffx.26637.1.S1_x_at4/114+27310208..27311194hypothetical protein
LOC_Os04g46430OsAffx.26637.2.S1_x_at2/114+27310208..27311194hypothetical protein
LOC_Os04g46440Os.55643.1.S1_at11/114+27320783..27321770DRE binding factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54929.1.S1_at--72--1951Chr04:27298868..27298892 (25 bp)
ACGGCGGCCAGGACAATGCTCTCTT
LOC_Os04g46400
Os.54929.1.S1_at--643--10551Chr04:27298907..27298931 (25 bp)
TTCTTCTCGACCTACGGGACGGGCT
LOC_Os04g46400
Os.54929.1.S1_at--783--9731Chr04:27299000..27299024 (25 bp)
TCAATGAGCCACTCTTGTGGGCCGA
LOC_Os04g46400
Os.54929.1.S1_at--997--8651Chr04:27299015..27299039 (25 bp)
TGTGGGCCGAGTAGCCATTTTACCT
LOC_Os04g46400
Os.54929.1.S1_at--251--3591Chr04:27299030..27299054 (25 bp)
CATTTTACCTTTCTGGGCTCATGAA
LOC_Os04g46400
Os.54929.1.S1_at--247--9471Chr04:27299041..27299065 (25 bp)
TCTGGGCTCATGAATAGGCTACAAC
LOC_Os04g46400
Os.54929.1.S1_at--435--10091Chr04:27299055..27299079 (25 bp)
TAGGCTACAACGACAACTCTCAAGA
LOC_Os04g46400
Os.54929.1.S1_at--712--7571Chr04:27299095..27299119 (25 bp)
GGGAAAAATGTTATTACCGCTATAT
LOC_Os04g46400
Os.54929.1.S1_at--606--3691Chr04:27299151..27299175 (25 bp)
CTATGTTGTGCTTGATTAGGCCATG
LOC_Os04g46400
Os.54929.1.S1_at--1086--10431Chr04:27299166..27299190 (25 bp)
TTAGGCCATGAAGCCTGTGTGCTTT
LOC_Os04g46400
Os.54929.1.S1_at--295--7471Chr04:27299182..27299206 (25 bp)
GTGTGCTTTGTGTACCAACAATCAA
LOC_Os04g46400
Target Sequence 
ACGGCGGCCAGGACAATGCTCTCTTCGACCTACCCGACCTTCTTCTCGACCTACGGGACGGGCTCTGGTGGTCGCCGGTG
TGGCCGGCGGCACTGGCGGCCGAGGAGTACGACGGCGGCGACGCCGTCGTGCTCAATGAGCCACTCTTGTGGGCCGAGTA
GCCATTTTACCTTTCTGGGCTCATGAATAGGCTACAACGACAACTCTCAAGAAAGAAAGAAAAAAAAGGGAAAAATGTTA
TTACCGCTATATTTAGTAGTTACTGCTATTGACAAAGTTTAGTCTATGTTGTGCTTGATTAGGCCATGAAGCCTGTGTGC
TTTGTGTACCAACAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis