Browse Element(s) Details


Os.55034.1.S1_at

Description gb:AK107351.1
DB_XREF= gi:32992560
TID=Os.55034.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-H06, full insert sequence.
FL= gb:AK107351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0899011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08940NANA6+4504108..4507416retrotransposon protein, putative, unclassified
LOC_Os06g08950NANA6+4508033..4514188retrotransposon protein, putative, unclassified
LOC_Os06g08960OsAffx.15322.1.S1_x_at11/116+4515894..4523961hypothetical protein
LOC_Os06g08960OsAffx.13740.1.S1_at1/116+4515894..4523961hypothetical protein
LOC_Os06g08970OsAffx.27522.1.S1_x_at7/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08970OsAffx.3613.1.S1_x_at2/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08970OsAffx.3613.1.S1_at1/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08980OsAffx.15323.1.S1_at5/116+4528985..4529416hypothetical protein
LOC_Os06g08990Os.55034.1.S1_at11/116+4529989..4531664expressed protein
LOC_Os06g09000OsAffx.15324.1.S1_at11/116+4533691..4534054hypothetical protein
LOC_Os06g09010OsAffx.15323.1.S1_at8/116+4535225..4536805hypothetical protein
LOC_Os06g09010OsAffx.15726.1.S1_at1/116+4535225..4536805hypothetical protein
LOC_Os06g09020Os.10201.1.S1_at11/116+4537330..4539523expressed protein
LOC_Os06g09030OsAffx.27523.1.S1_x_at1/116+4545927..4546190hypothetical protein
LOC_Os06g09040NANA6+4550878..4552664hypothetical protein
LOC_Os06g09050OsAffx.4776.1.S1_s_at2/116+4555488..4557021hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55034.1.S1_at--583--2291Chr06:4531086..4531110 (25 bp)
AAATGTGGCGTTGACTTTCTAAAGA
LOC_Os06g08990
Os.55034.1.S1_at--70--8911Chr06:4531142..4531166 (25 bp)
TGAGATCTGCATATCCATCGACGGG
LOC_Os06g08990
Os.55034.1.S1_at--90--7851Chr06:4531170..4531194 (25 bp)
GGTACTTATTGCTTTGACACTGTGA
LOC_Os06g08990
Os.55034.1.S1_at--103--5171Chr06:4531240..4531264 (25 bp)
GCAAGTTTGAGTATGTCCACGAGCT
LOC_Os06g08990
Os.55034.1.S1_at--211--8111Chr06:4531328..4531352 (25 bp)
GGACGAGTACCTGCAACCACAGATA
LOC_Os06g08990
Os.55034.1.S1_at--439--6471Chr06:4531349..4531373 (25 bp)
GATACGCCACTGCTGGAACGAACTT
LOC_Os06g08990
Os.55034.1.S1_at--330--851Chr06:4531394..4531418 (25 bp)
ATGGAAGCAGATACGGGACCCTCAG
LOC_Os06g08990
Os.55034.1.S1_at--312--3311Chr06:4531464..4531488 (25 bp)
CACACTGGTGACTTTGGCGATGGAT
LOC_Os06g08990
Os.55034.1.S1_at--969--5271Chr06:4531499..4531523 (25 bp)
GAATGTTTCTGTCCTGACTGGTGTA
LOC_Os06g08990
Os.55034.1.S1_at--976--6811Chr06:4531526..4531550 (25 bp)
GTTTACCCATGCCAATGTTGACCAT
LOC_Os06g08990
Os.55034.1.S1_at--876--1371Chr06:4531609..4531633 (25 bp)
AGACCATCACGGCAGTTTTCTGATT
LOC_Os06g08990
Target Sequence 
AAATGTGGCGTTGACTTTCTAAAGATCATCTCATATGGTTTGGTTAAAGGTGGCTCTGAGATCTGCATATCCATCGACGG
GGTTGGTACTTATTGCTTTGACACTGTGAAACACACTTGGATTGAAGTGGGCAAGTGGATGCTACCCTTCCAAGGCAAGT
TTGAGTATGTCCACGAGCTCAAGCTCTGGTTTGGCTTCACTCCCAACGATGGCCACTTTGCTGTTGCTGACCTCTCTGCC
ATGGACGAGTACCTGCAACCACAGATACGCCACTGCTGGAACGAACTTGATGAGTCACTCATCCAAGGATGGAAGCAGAT
ACGGGACCCTCAGCTTGTCAACCTGGGGTCTGCCAAGTTCTGCATCGCAAGGTTCTTTCACACTGGTGACTTTGGCGATG
GATTGAGTGGCCAGAATGTTTCTGTCCTGACTGGTGTAGAGTTTACCCATGCCAATGTTGACCATGAGAATATTGGATTG
ATCAAGCACAAATCGAGATGTCACAAGTCTAGCTGCGGTGAGGAGACCATCACGGCAGTTTTCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis