Browse Element(s) Details


Os.55056.1.A1_at

Description gb:AK107391.1
DB_XREF= gi:32992600
TID=Os.55056.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C12, full insert sequence.
FL= gb:AK107391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4820011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein
LOC_Os02g48200Os.55056.1.A1_at11/112+29509795..29512887Protein kinase domain containing protein, expressed
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55056.1.A1_at--966--3631Chr02:29510130..29510154 (25 bp)
CTTCCAGGTGAGCAAAGAGCATGAC
LOC_Os02g48200
Os.55056.1.A1_at--748--671Chr02:29510040..29510064 (25 bp)
AGGCCTGGTCAATCGAGACCGTCGA
LOC_Os02g48200
Os.55056.1.A1_at--716--3891Chr02:29510014..29510038 (25 bp)
CTGGTGGAACACTGGACGACGTGCA
LOC_Os02g48200
Os.55056.1.A1_at--259--6071Chr02:29509988..29510012 (25 bp)
GAGTATGACCAAACAAAACGGAGTA
LOC_Os02g48200
Os.55056.1.A1_at--519--2411Chr02:29509962..29509986 (25 bp)
AAAAATGTGCGTTGCCATGGAATGG
LOC_Os02g48200
Os.55056.1.A1_at--641--10331Chr02:29509912..29509936 (25 bp)
TTTCAACTTGCTGCGTTAAATACAA
LOC_Os02g48200
Os.55056.1.A1_at--1091--2171Chr02:29509891..29509915 (25 bp)
ACAATCTAGTGGTGTACGGCGGTGA
LOC_Os02g48200
Os.55056.1.A1_at--520--7391Chr02:29509870..29509894 (25 bp)
GTGAGTGTAGTTTATGCGAGTAGTA
LOC_Os02g48200
Os.55056.1.A1_at--192--6091Chr02:29509853..29509877 (25 bp)
GAGTAGTAGCTGTATTTGTCACGTC
LOC_Os02g48200
Os.55056.1.A1_at--723--4731Chr02:29509845..29509869 (25 bp)
GCTGTATTTGTCACGTCAGAATTTT
LOC_Os02g48200
Os.55056.1.A1_at--648--10371Chr02:29509821..29509845 (25 bp)
TTTTTTCCCATGGTGCGCAAGAGGG
LOC_Os02g48200
Target Sequence 
CTTCCAGGTGAGCAAAGAGCATGACGTGGCGGAGAAGGACGTGGCCGCNGNGTGAACNGCCGGGAAGAGTCAGCGGCTCG
CGTGCGGGCGAGGCCTGGTCAATCGAGACCGTCGAGCTGGTGGAACACTGGACGACGTGCANGAGTATGACCAAACAAAA
CGGAGTAAAAAAATGTGCGTTGCCATGGAATGGCGGAGGTTGTTTTTGCTCTAACATTTTTCAACTTGCTGCGTTAAATA
CAATCTAGTGGTGTACGGCGGTGAGTGTAGTTTATGCGAGTAGTAGCTGTATTTGTCACGTCAGAATTTTTTTTCCCATG
GTGCGCAAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55056.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis