Browse Element(s) Details


Os.55077.1.S1_at

Description gb:AK107430.1
DB_XREF= gi:32992639
TID=Os.55077.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A06, full insert sequence.
FL= gb:AK107430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1530011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15250OsAffx.19542.3.S1_x_at3/115+8628495..8632701retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15260OsAffx.4344.1.S1_at11/115+8634354..8635570hypothetical protein
LOC_Os05g15270Os.36426.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15270OsAffx.199.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55077.1.S1_at--1087--1651Chr05:8657405..8657427 (23 bp)
AGCGCCGTTGGACGCTTACGTGATA
LOC_Os05g15300
Os.55077.1.S1_at--514--9472Chr05:8747985..8748037 (25 bp)
TCTGATATACAGTCTCTGCGACATG
NONE
Os.55077.1.S1_at--322--152Chr05:8748153..8748177 (25 bp)
ATTAGGTGGCACCTCAAATCAGCAA
NONE
Os.55077.1.S1_at--565--5052Chr05:8748382..8748510 (25 bp)
GCAGCAGGTCAAGATAAGCTTTCCT
NONE
Os.55077.1.S1_at--220--5012Chr05:8748545..8748569 (25 bp)
GCATGGATTTCAAGCTACGGCCGTA
NONE
Os.55077.1.S1_at--417--4831Chr05:8656107..8656131 (25 bp)
GCTACGGCCGTAGATTAGTTTAAGA
LOC_Os05g15300
Os.55077.1.S1_at--841--6452Chr05:8748619..8748873 (25 bp)
GATAATTCACATTTGGATGGTCTCA
NONE
Os.55077.1.S1_at--104--6251Chr05:8656009..8656033 (25 bp)
GATGGTCTCAGTGTACTTTAGTCAG
LOC_Os05g15300
Os.55077.1.S1_at--258--6951Chr05:8655953..8655977 (25 bp)
GTAGATACCTCGTGGATTCTTCGTA
LOC_Os05g15300
Os.55077.1.S1_at--77--6571Chr05:8655939..8655963 (25 bp)
GATTCTTCGTATTTTCATCCTAATT
LOC_Os05g15300
Os.55077.1.S1_at--1016--2291Chr05:8655893..8655917 (25 bp)
AAATGGTATGCCCTTATGTCAAGCA
LOC_Os05g15300
Target Sequence 
AGCGCCGTTGGACGCTTACGTGATAAGGAGGAACATCTAGTCAAGGAATATCGTGATCTGAAACTCGAGATTGAACAAAT
TAAATCTGATATACAGTCTCTGCGACATGAGAAGGAAGGGAGAGGCTACCATAAGGAAACATTAGGTGGCACCTCAAATC
AGCAAAAACAAGAGAATAACGAGAAAACAAAGCAACCAGCGATAGATGGTATTATGAAGTCATTACGAGCAAAAGCAACA
AAGTTGCAGCAGGTCAAGATAAGCTTTCCTTGGGAGAAGATGAAGAAAGCCAAGAATATATTCAGCATGGATTTCAAGCT
ACGGCCGTAGATTAGTTTAAGAAGTTCCCGAAAACGAATTTAATCTAGTCATCAAACAAGAAATGCAGATGTGTAATTGT
GATAATTCACATTTGGATGGTCTCAGTGTACTTTAGTCAGAGTTTTGTTATTTATGAACCGTTTTTCTAGAGTAGATACC
TCGTGGATTCTTCGTATTTTCATCCTAATTGTGTTATCAAGCTTGTTGTGCAAATGGTATGCCCTTATGTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis