Browse Element(s) Details


Os.55080.1.S1_at

Description gb:AK107436.1
DB_XREF= gi:32992645
TID=Os.55080.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A12, full insert sequence.
FL= gb:AK107436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g170704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17040OsAffx.31013.1.S1_at11/1111+9418202..9418555hypothetical protein
LOC_Os11g17049NANA11+9423126..9423886NA
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein
LOC_Os11g17070Os.55080.1.S1_at4/1111+9441855..9442396hypothetical protein
LOC_Os11g17080Os.52734.1.S1_at11/1111+9449489..9457254Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os11g17090OsAffx.18892.1.S1_at10/1111+9457588..9459448hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55080.1.S1_at--483--6731Chr11:9443054..9443576 (25 bp)
GTTCTTGATCCTCAGCTAAATCACA
NONE
Os.55080.1.S1_at--1137--7371Chr11:9443024..9443048 (25 bp)
GTGATGCCTACTCGTGAAGAACTGA
NONE
Os.55080.1.S1_at--259--8031Chr11:9442479..9442503 (25 bp)
GGAGTGCAACCTTAACTGTGTGCTA
NONE
Os.55080.1.S1_at--1021--6631Chr11:9442385..9442409 (25 bp)
GTTGTTCCAAGCCATGGCATCAACG
NONE
Os.55080.1.S1_at--161--4411Chr11:9442348..9442372 (25 bp)
GCCACACCGCATCTATGTCAGTGCT
LOC_Os11g17070
Os.55080.1.S1_at--187--1131Chr11:9441991..9442353 (25 bp)
AGTGCTCGTTTCTTGTGGTCTCCAC
LOC_Os11g17070
Os.55080.1.S1_at--844--4871Chr11:9441875..9441899 (25 bp)
GCTATAGTGGAGACAGATTTCCTTA
LOC_Os11g17070
Os.55080.1.S1_at--1074--6511Chr11:9441860..9441884 (25 bp)
GATTTCCTTAAAAGTGTTTCTGCTA
LOC_Os11g17070
Os.55080.1.S1_at--669--1411Chr11:9441825..9441849 (25 bp)
AGACATGCACTCAAATACAGATAGA
NONE
Os.55080.1.S1_at--150--3191Chr11:9441798..9441822 (25 bp)
CAATGCTAACAAAAGACTCTCTGGT
NONE
Os.55080.1.S1_at--211--5711Chr11:9441784..9441808 (25 bp)
GACTCTCTGGTCCTCAAAAAGCAGT
NONE
Target Sequence 
GTTCTTGATCCTCAGCTAAATCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAAC
ATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCAACCTTAACTGTGTGCTACTCC
AACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGCATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCAT
GGCATCAACGGCCTTCCTCAACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCACT
CCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCTGCACTTGGTGGTGATAATGCT
ATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATGTGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGC
TAACAAAAGACTCTCTGGTCCTCAAAAAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis