Browse Element(s) Details


Os.55117.2.S1_x_at

Description gb:AK107515.1
DB_XREF= gi:32992724
TID=Os.55117.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F03, full insert sequence.
FL= gb:AK107515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0766011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55117.2.S1_x_at--312--3431Chr01:3680647..3680671 (25 bp)
CAGTTCGAGGTCTCTTACCTGATTT
LOC_Os01g07660
Os.55117.2.S1_x_at--355--6351Chr01:3680270..3680294 (25 bp)
GATGCGGATTGAGCGTGACCACTAC
LOC_Os01g07660
Os.55117.2.S1_x_at--1007--9111Chr01:3680121..3680144 (24 bp)
TGCTGCAGAACCATACCCATTGATG
LOC_Os01g07660
Os.55117.2.S1_x_at--841--6631Chr01:3680087..3680111 (25 bp)
GTTGAAATTCACTACCAGACCATCC
LOC_Os01g07660
Os.55117.2.S1_x_at--183--7071Chr01:3680062..3680086 (25 bp)
GTAATCAGCATGAAGCTCTCCCGTA
LOC_Os01g07660
Os.55117.2.S1_x_at--365--3911Chr01:3680023..3680047 (25 bp)
CTGGCATGCACTTCTTCTCAGTTAA
LOC_Os01g07660
Os.55117.2.S1_x_at--258--731Chr01:3679999..3680023 (25 bp)
ATGATTGTCTTTCATTACTTCTTCT
LOC_Os01g07660
Os.55117.2.S1_x_at--743--9891Chr01:3679984..3680008 (25 bp)
TACTTCTTCTCAATGCTGTAATGCT
LOC_Os01g07660
Os.55117.2.S1_x_at--1070--2971Chr01:3679940..3679964 (25 bp)
AATGTGTGACACAGGTCCGGTGCCA
LOC_Os01g07660
Os.55117.2.S1_x_at--129--791Chr01:3679821..3679845 (25 bp)
ATGTGTTCTCCGTTTGGATGTTGCA
LOC_Os01g07660
Os.55117.2.S1_x_at--927--1171Chr01:3679794..3679818 (25 bp)
AGTATGCTTGTACGGTTCTACCACA
LOC_Os01g07660
Target Sequence 
CAGTTCGAGGTCTCTTACCTGATTTTGCAAGTGAGGAATGAGTTTGAAATTTACTCTCTTAGATCCATGGTGAATCCCAA
TGTACAAATTATTACTCGAGTGCTTTTTGTAGAAGTAATTCAAAGGACAATGATGCGGATTGAGCGTGACCACTACATTC
AAATTCTTTTACAAGCCTCGGGGATAGCTGCTGCAGAACCATACCCATTGATGCTTAGGGATGTTGAAATTCACTACCAG
ACCATCCGTAATCAGCATGAAGCTCTCCCGTAATAGAGCTGCAACACTGGCATGCACTTCTTCTCAGTTAATGATTGTCT
TTCATTACTTCTTCTCAATGCTGTAATGCTAGTAGATTAATACTATCTTAATGTGTGACACAGGTCCGGTGCCAAGGCAC
AGAAACTTGAGGCGAAGAGATATGACAACTGATTGAACTGAGTTGAGCGTATAGGAGTGGAGATGTGACGACAGAATTCA
GAAGAGAGATGTGTTCTCCGTTTGGATGTTGCAGTAGTATGCTTGTACGGTTCTACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55117.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis