Browse Element(s) Details


Os.55135.1.S1_at

Description gb:AK107552.1
DB_XREF= gi:32992761
TID=Os.55135.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A11, full insert sequence.
FL= gb:AK107552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4328011/11elongator component, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed
LOC_Os06g43260OsAffx.28077.1.S1_at11/116+25992669..25994758hypothetical protein
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed
LOC_Os06g43280Os.55135.1.S1_at11/116+26006061..26009416elongator component, putative, expressed
LOC_Os06g43290Os.46785.2.S1_x_at4/116+26011705..26015703retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43304Os.51066.1.S1_at11/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43304OsAffx.21292.1.S1_at1/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43320OsAffx.28078.1.S1_at1/116+26033893..26037159Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55135.1.S1_at--1148--1011Chr06:26006624..26006648 (25 bp)
AGGTCCCCGTCATATTGGAGGCGTC
LOC_Os06g43280
Os.55135.1.S1_at--928--6211Chr06:26006607..26006631 (25 bp)
GAGGCGTCCACGTTTTCTCTGAAGT
LOC_Os06g43280
Os.55135.1.S1_at--911--1051Chr06:26006524..26006548 (25 bp)
AGGTGGTCCTTCACTTGATGCATCT
LOC_Os06g43280
Os.55135.1.S1_at--215--8871Chr06:26006509..26006533 (25 bp)
TGATGCATCTGGCAGTTGCTCCTCA
LOC_Os06g43280
Os.55135.1.S1_at--313--7891Chr06:26006475..26006499 (25 bp)
GGTTCACAGCTTGATTTCTAGTTCA
LOC_Os06g43280
Os.55135.1.S1_at--1049--1291Chr06:26006451..26006475 (25 bp)
AGATGCTGAACCTGGTCTCCGAGAA
LOC_Os06g43280
Os.55135.1.S1_at--1021--9691Chr06:26006413..26006437 (25 bp)
TCACACGAGCTTCACAGTATCACTT
LOC_Os06g43280
Os.55135.1.S1_at--483--4891Chr06:26006377..26006401 (25 bp)
GCTTTCATGTTTCAGCTGAGAGGAT
LOC_Os06g43280
Os.55135.1.S1_at--574--1691Chr06:26006235..26006259 (25 bp)
AGCCAGTCCAATCCCATGTATGGTT
LOC_Os06g43280
Os.55135.1.S1_at--858--7511Chr06:26006205..26006229 (25 bp)
GTGGACTTCTGCTATACAAACTCTT
LOC_Os06g43280
Os.55135.1.S1_at--132--5611Chr06:26006166..26006190 (25 bp)
GAAATTGTACTACCTCTGTCCAAAA
LOC_Os06g43280
Target Sequence 
AGGTCCCCGTCATATTGGAGGCGTCCACGTTTTCTCTGAAGTTGCGCAAGAGGAGGTCGCTGGTGTTAGAACGGTTGAAT
CAAGCTCCAGTGGGTGGATCAGGTGGTCCTTCACTTGATGCATCTGGCAGTTGCTCCTCATCCTCACAAGGTTCACAGCT
TGATTTCTAGTTCAGATGCTGAACCTGGTCTCCGAGAAGATGGGAAGGCCTTCACACGAGCTTCACAGTATCACTTGATG
ACTAGTAGCTTTCATGTTTCAGCTGAGAGGATGCTCAGAAAAAGTATTGACACAGAAGGTTCTGGTGTTGTGTAATTGTT
GCTCTCTGGAAAAATGTAGTTTGTAGAGGTTTAGTTCTTTACAAATTAGGCAATTTGGTGGATAGTATCAGCCAGTCCAA
TCCCATGTATGGTTCAGTTGTGGACTTCTGCTATACAAACTCTTTTGTTAATCAGGTTGAAATTGTACTACCTCTGTCCA
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis