Browse Element(s) Details


Os.55156.1.S1_at

Description gb:AK107598.1
DB_XREF= gi:32992807
TID=Os.55156.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-B02, full insert sequence.
FL= gb:AK107598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2909011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29040Os.40093.1.S1_at11/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29040Os.40093.2.S1_x_at10/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29050NANA2+17203880..17205976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29060NANA2+17207503..17208818retrotransposon protein, putative, unclassified
LOC_Os02g29070OsAffx.12264.1.S1_at11/112+17211664..17212593Protein kinase domain containing protein
LOC_Os02g29080OsAffx.24488.1.S1_at11/112+17214377..17214919hypothetical protein
LOC_Os02g29080OsAffx.30320.1.S1_x_at1/112+17214377..17214919hypothetical protein
LOC_Os02g29090Os.55156.1.S1_at11/112+17217744..17221458expressed protein
LOC_Os02g29100OsAffx.24489.1.S1_at11/112+17223153..17227085Heat shock protein STI, putative
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative
LOC_Os02g29120NANA2+17238521..17238862hypothetical protein
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55156.1.S1_at--227--5731Chr02:17218769..17218793 (25 bp)
GACTGCGCTATCAAATTCTCCGAGA
LOC_Os02g29090
Os.55156.1.S1_at--1048--8531Chr02:17218800..17218824 (25 bp)
TGGAGAGCCTCACATTTGCCCAGAT
LOC_Os02g29090
Os.55156.1.S1_at--701--8991Chr02:17218878..17218902 (25 bp)
TGAAGAGACTCCACGCTGGTTATCC
LOC_Os02g29090
Os.55156.1.S1_at--938--9151Chr02:17218903..17218927 (25 bp)
TGCGCTGAGCTTGCACGACAGTGAT
LOC_Os02g29090
Os.55156.1.S1_at--516--731Chr02:17218926..17218950 (25 bp)
ATGTTGTCTACATCATGCACACACC
LOC_Os02g29090
Os.55156.1.S1_at--319--891Chr02:17219039..17219063 (25 bp)
AGGCCTGTGGGCTACGGTTTCACCT
LOC_Os02g29090
Os.55156.1.S1_at--577--6411Chr02:17219077..17219101 (25 bp)
GATCTCCAAGCATCTCAGCAATTGT
LOC_Os02g29090
Os.55156.1.S1_at--610--8891Chr02:17221286..17221310 (25 bp)
TGAGGGTGTTGCAACCGCAGCCTGA
LOC_Os02g29090
Os.55156.1.S1_at--233--4211Chr02:17221300..17221324 (25 bp)
CCGCAGCCTGACTCTTAAGGTTTGA
LOC_Os02g29090
Os.55156.1.S1_at--811--1791Chr02:17221399..17221423 (25 bp)
ACCCGTGATGGCTAGTGTTGCATTA
LOC_Os02g29090
Os.55156.1.S1_at--1030--6231Chr02:17221426..17221450 (25 bp)
GATGGACTTGTATTACCTTACTTCT
LOC_Os02g29090
Target Sequence 
GACTGCGCTATCAAATTCTCCGAGATCCCAGTGGAGAGCCTCACATTTGCCCAGATGCTGCGGCTGCAGCCTAATCTGAA
GCAGGGTACGGGTACAACGAGGCTAACTTTGAAGAGACTCCACGCTGGTTATCCTGCGCTGAGCTTGCACGACAGTGATG
TTGTCTACATCATGCACACACCTGATCCCGACGAGGAGGACAAGGCGTTGGTGATTGCTGTTGATATGAGGAACAAGGCT
CTAAAGGGTGTGGCTGATTTTGGCTTTGGAAGGCCTGTGGGCTACGGTTTCACCTACCTTCAAACTGGGATCTCCAAGCA
TCTCAGCAATTGTTCTTCTTCCTCCAGGGATGGAATTTTGGGAGCAGGCGAGAAAGAAGTTCCAGGTGAGGGTGTTGCAA
CCGCAGCCTGACTCTTAAGGTTTGAAGCAGGGCATGGCCGTCAAGCAGAGTGGTGGTACTTATTATTATAGCAAGTTGAA
ACAATGCCCTTCACACCTCACCCGTGATGGCTAGTGTTGCATTATCGATGGACTTGTATTACCTTACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis