Browse Element(s) Details


Os.55188.1.S1_at

Description gb:AK107643.1
DB_XREF= gi:32992852
TID=Os.55188.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F04, full insert sequence.
FL= gb:AK107643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4291011/11expressed protein
LOC_Os06g429201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42880NANA6+25762645..25763073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42890OsAffx.28070.1.S1_at11/116+25766853..25768666myb family protein, putative
LOC_Os06g42900Os.40360.1.S1_at9/116+25772770..25776368hypothetical protein
LOC_Os06g42900Os.40360.1.S1_x_at7/116+25772770..25776368hypothetical protein
LOC_Os06g42900Os.40855.5.S1_x_at3/116+25772770..25776368hypothetical protein
LOC_Os06g42910Os.55188.1.S1_at11/116+25784601..25786651expressed protein
LOC_Os06g42920Os.55188.1.S1_at1/116+25791438..25792052hypothetical protein
LOC_Os06g42930OsAffx.5085.1.S1_at11/116+25792449..25793069hypothetical protein
LOC_Os06g42940OsAffx.18229.1.S1_x_at1/116+25799398..25801231retrotransposon protein, putative, unclassified
LOC_Os06g42950NANA6+25804943..25805639retrotransposon protein, putative, unclassified
LOC_Os06g42960NANA6+25807142..25808545retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55188.1.S1_at--136--7291Chr06:25786057..25786081 (25 bp)
GTGCCGACAAACTACGCCATACATG
LOC_Os06g42910
Os.55188.1.S1_at--271--711Chr06:25786079..25786103 (25 bp)
ATGAGGCTCCGGACTTTGACCCAAA
LOC_Os06g42910
Os.55188.1.S1_at--666--7411Chr06:25786147..25786171 (25 bp)
GTGTTGCTGAGCTTGACATCGACGC
LOC_Os06g42910
Os.55188.1.S1_at--953--8951Chr06:25786160..25786184 (25 bp)
TGACATCGACGCTCCTTGACATTGA
LOC_Os06g42910
Os.55188.1.S1_at--176--2551Chr06:25786186..25786210 (25 bp)
AACTCATTGACTCTGGTTGCCGACG
LOC_Os06g42910
Os.55188.1.S1_at--1118--912Chr06:25786229..25786253 (25 bp)
AGGCAGCCGTTGACGTCGCATCATC
LOC_Os06g42910
Os.55188.1.S1_at--713--7212Chr06:25790730..25790754 (25 bp)
GTCGACCCAAGGTGCTGCTGGGAAT
NONE
Os.55188.1.S1_at--1053--8411Chr06:25786415..25786439 (25 bp)
GGCCGATAATGTTCGACTTCGACCT
LOC_Os06g42910
Os.55188.1.S1_at--603--5431Chr06:25786444..25786468 (25 bp)
GAACCAGCATCCAATTTCGAATGAA
LOC_Os06g42910
Os.55188.1.S1_at--1072--1711Chr06:25786489..25786513 (25 bp)
ACCAGCTTCGGGTGATCTGCAATGT
LOC_Os06g42910
Os.55188.1.S1_at--746--2851Chr06:25786529..25786553 (25 bp)
AAGTCGATTGTATCCATCTTGTAAT
LOC_Os06g42910
Target Sequence 
GTGCCGACAAACTACGCCATACATGAGGCTCCGGACTTTGACCCAAACGTCTTCTTCGCCGATGTGCCCGACGGGGAGCA
GGACGAGCTCGTGTTGCTGAGCTTGACATCGACGCTCCTTGACATTGACAACTCATTGACTCTGGTTGCCGACGATGCAG
CCTCGTCGGCTCAGGCAGCCGTTGACGTCGCATCATCGTCAGCTCAGGCTGCCATCGATGTCCCTTCCTCGTCGGTTCTG
GCTGTCGTCGACATCCCCTCCTCATCGGCTCAGGCTGCCATTGACGTTCCCGCCTCATTGGCTCAGGCTGCCACTGGTGT
TGCATCCTCGTCGACCCAAGGTGCTGCTGGGAATGAGAGGCCGATAATGTTCGACTTCGACCTCAACGAACCAGCATCCA
ATTTCGAATGAAGACGATGATTCAAAGAAAGCACCAGCTTCGGGTGATCTGCAATGTATCCGATAATTTACTAAGTCGAT
TGTATCCATCTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis