CREP Browser

OsAffx.5085.1.S1_at

Description

tigr:9634.m04144
TID=OsAffx.5085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g42930	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g42890	OsAffx.28070.1.S1_at	11/11	6	+	25766853..25768666	myb family protein, putative
LOC_Os06g42900	Os.40360.1.S1_at	9/11	6	+	25772770..25776368	hypothetical protein
LOC_Os06g42900	Os.40360.1.S1_x_at	7/11	6	+	25772770..25776368	hypothetical protein
LOC_Os06g42900	Os.40855.5.S1_x_at	3/11	6	+	25772770..25776368	hypothetical protein
LOC_Os06g42910	Os.55188.1.S1_at	11/11	6	+	25784601..25786651	expressed protein
LOC_Os06g42920	Os.55188.1.S1_at	1/11	6	+	25791438..25792052	hypothetical protein
LOC_Os06g42930	OsAffx.5085.1.S1_at	11/11	6	+	25792449..25793069	hypothetical protein
LOC_Os06g42940	OsAffx.18229.1.S1_x_at	1/11	6	+	25799398..25801231	retrotransposon protein, putative, unclassified
LOC_Os06g42950	NA	NA	6	+	25804943..25805639	retrotransposon protein, putative, unclassified
LOC_Os06g42960	NA	NA	6	+	25807142..25808545	retrotransposon protein, putative, unclassified
LOC_Os06g42970	Os.28943.1.S1_x_at	1/11	6	+	25815263..25816840	retrotransposon protein, putative, unclassified
LOC_Os06g42980	NA	NA	6	+	25817483..25823638	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5085.1.S1_at--121--1087	1	Chr06:25792709..25792733 (25 bp)	TTGGCGACTTTCTTTCTCATCTTGG	LOC_Os06g42930
OsAffx.5085.1.S1_at--120--205	1	Chr06:25792703..25792727 (25 bp)	ACTTTCTTTCTCATCTTGGCCGCCG	LOC_Os06g42930
OsAffx.5085.1.S1_at--582--791	1	Chr06:25792614..25792638 (25 bp)	GGTTGTCATGACAACATCATGGGCT	LOC_Os06g42930
OsAffx.5085.1.S1_at--652--895	1	Chr06:25792606..25792630 (25 bp)	TGACAACATCATGGGCTATCAACAC	LOC_Os06g42930
OsAffx.5085.1.S1_at--425--759	1	Chr06:25792594..25792618 (25 bp)	GGGCTATCAACACCGACTTTTCTGG	LOC_Os06g42930
OsAffx.5085.1.S1_at--258--423	1	Chr06:25792582..25792606 (25 bp)	CCGACTTTTCTGGTTATGGCACAAC	LOC_Os06g42930
OsAffx.5085.1.S1_at--441--389	1	Chr06:25792573..25792597 (25 bp)	CTGGTTATGGCACAACTGTTGCGGT	LOC_Os06g42930
OsAffx.5085.1.S1_at--860--1069	1	Chr06:25792555..25792579 (25 bp)	TTGCGGTGGTGAGCTTAGTCGTCAC	LOC_Os06g42930
OsAffx.5085.1.S1_at--716--859	1	Chr06:25792549..25792573 (25 bp)	TGGTGAGCTTAGTCGTCACCGGTGC	LOC_Os06g42930
OsAffx.5085.1.S1_at--694--343	1	Chr06:25792504..25792528 (25 bp)	CAGAGGCAGCGGGTATGTATGACAC	LOC_Os06g42930
OsAffx.5085.1.S1_at--635--691	1	Chr06:25792492..25792516 (25 bp)	GTATGTATGACACCGGGAAAATCAA	LOC_Os06g42930

Target Sequence

TTGGCGACTTTCTTTCTCATCTTGGCCGCCGGCGATGGCTGCGGCGACGCATGTGATGGCCATGCGATGTTGGAGAAGAC
ACCATTGGGGAAGAAGGTTGTCATGACAACATCATGGGCTATCAACACCGACTTTTCTGGTTATGGCACAACTGTTGCGG
TGGTGAGCTTAGTCGTCACCGGTGCCGGTGCCGGTGCAGCTACGGCAGAGGCAGCGGGTATGTATGACACCGGGAAAATC
AA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details