Browse Element(s) Details


Os.55210.1.S1_at

Description gb:AK107672.1
DB_XREF= gi:32992881
TID=Os.55210.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H10, full insert sequence.
FL= gb:AK107672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4796010/11HECT-domain-containing protein, putative, expressed
LOC_Os02g044901/11p300/CBP acetyltransferase-related protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47930Os.2860.1.S1_at11/113+27187647..27200141expressed protein
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g47960Os.55210.1.S1_at10/113+27214733..27217751HECT-domain-containing protein, putative, expressed
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006358biological_processregulation of global transcription from RNA polymerase II promoter
GO:0006464biological_processprotein modification
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003712molecular_functiontranscription cofactor activity
GO:0004402molecular_functionhistone acetyltransferase activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55210.1.S1_at--606--10451Chr03:27215219..27215243 (25 bp)
TTACAGTAACTTTTTTCTTGAGGCT
LOC_Os03g47960
Os.55210.1.S1_at--655--10311Chr03:27215206..27215230 (25 bp)
TTTCTTGAGGCTCTTGATCCACTGA
LOC_Os03g47960
Os.55210.1.S1_at--150--6371Chr03:27215191..27215215 (25 bp)
GATCCACTGAGCTGGCACAAATGGG
LOC_Os03g47960
Os.55210.1.S1_at--888--3291Chr03:27215174..27215198 (25 bp)
CAAATGGGTAGTCTCTTCTCGGTGA
LOC_Os03g47960
Os.55210.1.S1_at--420--6971Chr03:27215114..27215138 (25 bp)
GTAGCCTCTAGATATTACTGTTTCA
LOC_Os03g47960
Os.55210.1.S1_at--993--7471Chr03:27215021..27215045 (25 bp)
GTGGGTCTACGATATGTAACCTTGT
LOC_Os03g47960
Os.55210.1.S1_at--132--851NONE
ATGGACGGATGCATGCTAAGCTACA
NONE
Os.55210.1.S1_at--800--4951Chr03:27214892..27214916 (25 bp)
GCATAGGTCCATAACTGTCCTTCAA
LOC_Os03g47960
Os.55210.1.S1_at--878--5471Chr03:27214830..27214854 (25 bp)
GAACTATCTTGGAGAGCTAGCTTTC
LOC_Os03g47960
Os.55210.1.S1_at--300--4851Chr03:27214815..27214839 (25 bp)
GCTAGCTTTCCTTTAACCATTACAG
LOC_Os03g47960
Os.55210.1.S1_at--575--1434Chr10:12750369..12750388 (20 bp)
AGAACAGCCTTTAGTCCCAAGCAAT
NONE
Target Sequence 
TTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTT
TTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGA
ATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACG
GATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAAC
TAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTAT
CTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis