Browse Element(s) Details


Os.55242.1.S1_x_at

Description gb:AK107717.1
DB_XREF= gi:32992926
TID=Os.55242.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E05, full insert sequence.
FL= gb:AK107717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4317411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43120OsAffx.15077.1.S1_at10/115+24953002..24955693GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g43130Os.9927.1.S1_at11/115+24958319..24960267Brix domain containing protein 1, putative, expressed
LOC_Os05g43140Os.49209.1.S1_at10/115+24961430..24962261expressed protein
LOC_Os05g43150OsAffx.25962.1.S1_at11/115+24963176..24968921transposon protein, putative, Mutator sub-class
LOC_Os05g43170Os.28096.1.S1_at11/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43170Os.18169.1.S1_at1/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43174Os.55242.1.S1_x_at11/115+24980177..24980799expressed protein
LOC_Os05g43174Os.51264.1.S1_x_at1/115+24980177..24980799expressed protein
LOC_Os05g43180OsAffx.15078.1.S1_at11/115+24988983..24989775hypothetical protein
LOC_Os05g43190OsAffx.15079.1.S1_at11/115+24994767..24995051hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55242.1.S1_x_at--122--10311Chr05:24980245..24980269 (25 bp)
TTTCTCCTCTCTCGGTCGGCGGAGG
LOC_Os05g43174
Os.55242.1.S1_x_at--182--6011Chr05:24980395..24980419 (25 bp)
GAGAGGCAGTGGCAGCTTGGCGGCG
LOC_Os05g43174
Os.55242.1.S1_x_at--244--9511Chr05:24980440..24980464 (25 bp)
TCTCTTGCTATCCGCGGCCGGCGGA
LOC_Os05g43174
Os.55242.1.S1_x_at--289--7195Chr12:15640646..15640666 (21 bp)
GTCGGATCTGGCGAAATGTTTCTTA
NONE
Os.55242.1.S1_x_at--140--7975Chr12:15640646..15640669 (24 bp)
GGATCTGGCGAAATGTTTCTTAAAA
NONE
Os.55242.1.S1_x_at--1004--734Chr12:15640657..15640681 (25 bp)
ATGTTTCTTAAAAGATTTCTGTGAA
NONE
Os.55242.1.S1_x_at--144--6534Chr05:24980661..24980685 (25 bp)
GATTTGTGTGATGTTCTTCAATGTT
LOC_Os05g43174
Os.55242.1.S1_x_at--716--2292Chr05:24980700..24980724 (25 bp)
AAATGATTTCTGTGATTTCTGTGAA
LOC_Os05g43174
Os.55242.1.S1_x_at--268--10611Chr05:24980707..24980731 (25 bp)
TTCTGTGATTTCTGTGAATGAGTTC
LOC_Os05g43174
Os.55242.1.S1_x_at--529--5271Chr05:24980722..24980746 (25 bp)
GAATGAGTTCTGTGATTTGGGATTG
LOC_Os05g43174
Os.55242.1.S1_x_at--969--7352Chr05:24980697..24980721 (25 bp)
GTGAAATGATTTCTGTGATTTCTGT
LOC_Os05g43174
Target Sequence 
TTTCTCCTCTCTCGGTCGGCGGAGGCGGCAGCGGCGGCTGCGCCCTCCCCTTCGCCAGATCCGGGGAGGGGCGGCCGCAG
AGGGGCGGACCAGTGGCGGCAGAGGGGCGACATGCGGCGGCAGAGGGGAGGGGGGATGCTGCGGTGGGATGAGAGGCAGT
GGCAGCTTGGCGGCGGCGCCCTCCCCTCTCGACTCTCTCTTGCTATCCGCGGCCGGCGGAGGCGTCAGCGGCAGTCGCGC
CCTCCCCTCTGCCAGATCCGGGGAGGGCGGCCCGGCGGCGGCCGTGGTGGGGCGGTCCAGTGGCGGCGGAAGGGAGGGGG
GATGCGGCGGCAGGACAAGAGGCGGTGGCGGCCTGGCGGCGGCTCCCTCCCTCCGTCGGATCTGGCGAAATGTTTCTTAA
AAGATTTCTGTGAAATGATTTGTGTGATGTTCTTCAATGTTTCTTGATGTTAGTGAAATGATTTCTGTGATTTCTGTGAA
TGAGTTCTGTGATTTGGGATTGGGGATTAGGGAATGTTTATTGATATTAGTGAAATGATTTCTGTGATTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55242.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis