Browse Element(s) Details


Os.55252.1.S1_at

Description gb:AK107739.1
DB_XREF= gi:32992948
TID=Os.55252.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-G07, full insert sequence.
FL= gb:AK107739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g492608/11copper-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49240OsAffx.4127.1.S1_at11/114+29166710..29167220expressed protein
LOC_Os04g49250Os.54071.1.S1_at11/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49250OsAffx.17756.1.S1_x_at1/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49260Os.55252.1.S1_at8/114+29189821..29190528copper-binding protein, putative, expressed
LOC_Os04g49270OsAffx.14339.1.S1_at11/114+29193644..29197750hypothetical protein
LOC_Os04g49280OsAffx.14340.1.S1_at11/114+29198531..29199912hypothetical protein
LOC_Os04g49290OsAffx.21085.1.S1_at8/114+29200004..29204367retrotransposon protein, putative, unclassified, expressed
LOC_Os04g49300NANA4+29204866..29209420retrotransposon protein, putative, LINE subclass
LOC_Os04g49310Os.54676.1.S1_at11/114+29211921..29215294expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55252.1.S1_at--701--8951NONE
TGACATGTAAATCGTCCTGGCCGCA
NONE
Os.55252.1.S1_at--779--1291Chr04:29190394..29190418 (25 bp)
AGATGAAGGTGCCACTCTACTCCTA
LOC_Os04g49260
Os.55252.1.S1_at--259--3731Chr04:29190378..29190402 (25 bp)
CTACTCCTACGGCTGCGAGAAGAAG
LOC_Os04g49260
Os.55252.1.S1_at--1063--931NONE
AGGAAGGCCCTGTCGCATCTGAGAG
NONE
Os.55252.1.S1_at--633--9851Chr04:29190180..29190204 (25 bp)
TACACTCGGTTCAGGTGGACTACCA
LOC_Os04g49260
Os.55252.1.S1_at--719--6351Chr04:29190035..29190059 (25 bp)
GATGCCGGCAGATGCTCGTAAGCAC
LOC_Os04g49260
Os.55252.1.S1_at--206--7051Chr04:29190018..29190042 (25 bp)
GTAAGCACTACCTGCAAGCGTTCAC
LOC_Os04g49260
Os.55252.1.S1_at--220--8191Chr04:29189970..29189994 (25 bp)
GGAAGAAGCTCTTTCCACTGATCCG
LOC_Os04g49260
Os.55252.1.S1_at--1015--8311NONE
GGCTGTTATCCGGAACTCAAAAGTT
NONE
Os.55252.1.S1_at--208--2331Chr04:29189927..29189951 (25 bp)
AAAGTTTCTGTCACGCGAACACGGG
LOC_Os04g49260
Os.55252.1.S1_at--535--7011Chr04:29189855..29189879 (25 bp)
GTACTCTGTTACTGTCTTTTTTGGG
LOC_Os04g49260
Target Sequence 
TGACATGTAAATCGTCCTGGCCGCAGGCAAAATCGAGGCGCAGTACGTGGAGATGAAGGTGCCACTCTACTCCTACGGCT
GCGAGAAGAAGATCAGGAAGGCCCTGTCGCATCTGAGAGGGATACACTCGGTTCAGGTGGACTACCAGCAGCAGAAGGTG
ACGGTGTGGGGGATCTGCAACCGCGACGACGTGCTCGCGGCCGTTCGGAAGAAGCGGCGAGCGGCGCGGTTCTGGGGCGC
CGACCAGCCCGACCTCGGGGAGGACTCGATGCCGGCAGATGCTCGTAAGCACTACCTGCAAGCGTTCACCGCGTACAGGT
TTAGGAAGTCTTGGAAGAAGCTCTTTCCACTGATCCGGCTGTTATCCGGAACTCAAAAGTTTCTGTCACGCGAACACGGG
CCGCCGGCTAGTGCGATTCAGGAGCGGCACCGGGGTTTCGAATAAATGTACTCTGTTACTGTCTTTTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis